Dong Xu
Dong Xu
Shumaker Endowed Professor, EECS Dept and C.S. Bond Life Sciences Center - University of Missouri
Verified email at missouri.edu - Homepage
Title
Cited by
Cited by
Year
Genome sequence of the palaeopolyploid soybean
J Schmutz, SB Cannon, J Schlueter, J Ma, T Mitros, W Nelson, DL Hyten, ...
Nature 463 (7278), 178-183, 2010
37052010
Hydrogen bonds and salt bridges across protein-protein interfaces.
D Xu, CJ Tsai, R Nussinov
Protein engineering 10 (9), 999-1012, 1997
4951997
Transcriptome dynamics of Deinococcus radiodurans recovering from ionizing radiation
Y Liu, J Zhou, MV Omelchenko, AS Beliaev, A Venkateswaran, J Stair, ...
Proceedings of the National Academy of Sciences 100 (7), 4191-4196, 2003
4082003
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees
Y Xu, V Olman, D Xu
Bioinformatics 18 (4), 536-545, 2002
3702002
An integrated transcriptome atlas of the crop model Glycine max, and its use in comparative analyses in plants
M Libault, A Farmer, T Joshi, K Takahashi, RJ Langley, LD Franklin, J He, ...
The Plant Journal 63 (1), 86-99, 2010
3682010
Inferring gene regulatory networks from multiple microarray datasets
Y Wang, T Joshi, XS Zhang, D Xu, L Chen
Bioinformatics 22 (19), 2413-2420, 2006
3412006
Ultradeep bisulfite sequencing analysis of DNA methylation patterns in multiple gene promoters by 454 sequencing
KH Taylor, RS Kramer, JW Davis, J Guo, DJ Duff, D Xu, CW Caldwell, ...
Cancer research 67 (18), 8511-8518, 2007
3122007
Protein binding versus protein folding: the role of hydrophilic bridges in protein associations
D Xu, SL Lin, R Nussinov
Journal of molecular biology 265 (1), 68-84, 1997
3091997
A critical assessment of Mus musculus gene function prediction using integrated genomic evidence
L Peña-Castillo, M Tasan, CL Myers, H Lee, T Joshi, C Zhang, Y Guan, ...
Genome Biol 9 (Suppl 1), S2, 2008
2792008
Protein threading using PROSPECT: design and evaluation
Y Xu, D Xu
Proteins: Structure, Function, and Bioinformatics 40 (3), 343-354, 2000
2462000
Epigenome-wide inheritance of cytosine methylation variants in a recombinant inbred population
RJ Schmitz, Y He, O Valdés-López, SM Khan, T Joshi, MA Urich, JR Nery, ...
Genome research 23 (10), 1663-1674, 2013
2202013
Comparisons among two fertile and three male-sterile mitochondrial genomes of maize
JO Allen, CM Fauron, P Minx, L Roark, S Oddiraju, GN Lin, L Meyer, ...
Genetics 177 (2), 1173-1192, 2007
2202007
Musite, a tool for global prediction of general and kinase-specific phosphorylation sites
J Gao, JJ Thelen, AK Dunker, D Xu
Molecular & Cellular Proteomics 9 (12), 2586-2600, 2010
2182010
Evaluation of 50-mer oligonucleotide arrays for detecting microbial populations in environmental samples
SM Tiquia, L Wu, SC Chong, S Passovets, D Xu, Y Xu, J Zhou
Biotechniques 36 (4), 664-675, 2004
1922004
Transcriptional and physiological responses of Bradyrhizobium japonicum to desiccation-induced stress
EJ Cytryn, DP Sangurdekar, JG Streeter, WL Franck, W Chang, G Stacey, ...
Journal of bacteriology 189 (19), 6751-6762, 2007
1872007
Using Internet search engines to obtain medical information: a comparative study
L Wang, J Wang, M Wang, Y Li, Y Liang, D Xu
Journal of Medical Internet Research 14 (3), e74, 2012
1802012
Microarray analysis of chitin elicitation in Arabidopsis thaliana
KM Ramonell, B Zhang, RM Ewing, Y Chen, D Xu, G Stacey, S Somerville
Molecular Plant Pathology 3 (5), 301-311, 2002
1612002
Minimum spanning trees for gene expression data clustering
Y Xu, V Olman, D Xu
Genome Informatics 12, 24-33, 2001
1612001
Quantitative relationship between synonymous codon usage bias and GC composition across unicellular genomes
XF Wan, D Xu, A Kleinhofs, J Zhou
BMC Evolutionary Biology 4 (1), 1-11, 2004
1592004
iPhos‐PseEvo: Identifying Human Phosphorylated Proteins by Incorporating Evolutionary Information into General PseAAC via Grey System Theory
WR Qiu, BQ Sun, X Xiao, D Xu, KC Chou
Molecular Informatics, 2016
1562016
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