Mohammed Alser
Title
Cited by
Cited by
Year
GRIM-Filter: Fast seed location filtering in DNA read mapping using processing-in-memory technologies
JS Kim, DS Cali, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ...
BMC genomics 19 (2), 23-40, 2018
632018
GateKeeper: A New Hardware Architecture for Accelerating Pre-Alignment in DNA Short Read Mapping
M Alser, H Hassan, H Xin, O Ergin, O Mutlu, C Alkan
Bioinformatics, 2017
572017
Shouji: a fast and efficient pre-alignment filter for sequence alignment
M Alser, H Hassan, A Kumar, O Mutlu, C Alkan
Bioinformatics 35 (21), 4255-4263, 2019
212019
MAGNET: understanding and improving the accuracy of genome pre-alignment filtering
M Alser, O Mutlu, C Alkan
arXiv preprint arXiv:1707.01631, 2017
142017
Apollo: a sequencing-technology-independent, scalable and accurate assembly polishing algorithm
C Firtina, JS Kim, M Alser, D Senol Cali, AE Cicek, C Alkan, O Mutlu
Bioinformatics 36 (12), 3669-3679, 2020
11*2020
Design and modeling of low-power clockless serial link for data communication systems
MH Alser, MM Assaad
2011 National Postgraduate Conference, 1-5, 2011
102011
GRIM-Filter: fast seed filtering in read mapping using emerging memory technologies
JS Kim, D Senol, H Xin, D Lee, S Ghose, M Alser, H Hassan, O Ergin, ...
arXiv preprint arXiv:1708.04329, 2017
92017
An FPGA-based design and implementation of an all-digital serializer for inter module communication in SoC
M Assaad, M Alser
IEICE Electronics Express 8 (23), 2017-2023, 2011
82011
Techniques for Reducing the Connected-Standby Energy Consumption of Mobile Devices
J Haj-Yahya, Y Sazeides, M Alser, E Rotem, O Mutlu
2020 IEEE International Symposium on High Performance Computer Architecture …, 2020
72020
Genome read in-memory (GRIM) filter: Fast location filtering in DNA read mapping using emerging memory technologies
J Kim, D Senol, H Xin, D Lee, M Alser, H Hassan, O Ergin, C Alkan, ...
Pacific Symp. Biocomputing, 2017
72017
GenASM: A High-Performance, Low-Power Approximate String Matching Acceleration Framework for Genome Sequence Analysis
DS Cali, GS Kalsi, Z Bingöl, C Firtina, L Subramanian, JS Kim, ...
2020 53rd Annual IEEE/ACM International Symposium on Microarchitecture …, 2020
62020
Accelerating genome analysis: a primer on an ongoing journey
M Alser, Z Bingöl, DS Cali, J Kim, S Ghose, C Alkan, O Mutlu
IEEE Micro 40 (5), 65-75, 2020
62020
SysScale: Exploiting multi-domain dynamic voltage and frequency scaling for energy efficient mobile processors
J Haj-Yahya, M Alser, J Kim, AG Yağlıkçı, N Vijaykumar, E Rotem, O Mutlu
2020 ACM/IEEE 47th Annual International Symposium on Computer Architecture …, 2020
62020
NATSA: A Near-Data Processing Accelerator for Time Series Analysis
I Fernandez, R Quislant, E Gutiérrez, O Plata, C Giannoula, M Alser, ...
2020 IEEE 38th International Conference on Computer Design (ICCD), 120-129, 2020
52020
Technology dictates algorithms: Recent developments in read alignment
M Alser, J Rotman, K Taraszka, H Shi, PI Baykal, HT Yang, V Xue, ...
arXiv preprint arXiv:2003.00110, 2020
52020
SneakySnake: A fast and accurate universal genome pre-alignment filter for CPUs, GPUs, and FPGAs
M Alser, T Shahroodi, J Gómez-Luna, C Alkan, O Mutlu
arXiv preprint arXiv:1910.09020, 2019
52019
Can you Really Anonymize the Donors of Genomic Data in Today’s Digital World?
M Alser, N Almadhoun, A Nouri, C Alkan, E Ayday
Data Privacy Management, and Security Assurance, 237-244, 2015
5*2015
Metalign: efficient alignment-based metagenomic profiling via containment min hash
N LaPierre, M Alser, E Eskin, D Koslicki, S Mangul
Genome biology 21 (1), 1-15, 2020
32020
MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples
N LaPierre, S Mangul, M Alser, I Mandric, NC Wu, D Koslicki, E Eskin
BMC genomics 20 (5), 1-10, 2019
32019
Data Privacy Management, and Security Assurance: 10th International Workshop, DPM 2015, and 4th International Workshop, QASA 2015, Vienna, Austria, September 21-22, 2015 …
J Garcia-Alfaro, G Navarro-Arribas, A Aldini, F Martinelli, N Suri
Springer, 2016
32016
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Articles 1–20