| Increased methylation variation in epigenetic domains across cancer types KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ... Nature genetics 43 (8), 768, 2011 | 983 | 2011 |
| Recapitulation of premature ageing with iPSCs from Hutchinson–Gilford progeria syndrome GH Liu, BZ Barkho, S Ruiz, D Diep, J Qu, SL Yang, AD Panopoulos, ... Nature 472 (7342), 221-225, 2011 | 495 | 2011 |
| Genome-wide analysis reveals TET-and TDG-dependent 5-methylcytosine oxidation dynamics L Shen, H Wu, D Diep, S Yamaguchi, AC D’Alessio, HL Fung, K Zhang, ... Cell 153 (3), 692-706, 2013 | 465 | 2013 |
| The metabolome of induced pluripotent stem cells reveals metabolic changes occurring in somatic cell reprogramming AD Panopoulos, O Yanes, S Ruiz, YS Kida, D Diep, R Tautenhahn, ... Cell research 22 (1), 168-177, 2012 | 462 | 2012 |
| Tet1 controls meiosis by regulating meiotic gene expression S Yamaguchi, K Hong, R Liu, L Shen, A Inoue, D Diep, K Zhang, Y Zhang Nature 492 (7429), 443-447, 2012 | 248 | 2012 |
| Advances in the profiling of DNA modifications: cytosine methylation and beyond N Plongthongkum, DH Diep, K Zhang Nature Reviews Genetics 15 (10), 647-661, 2014 | 210 | 2014 |
| Identification of methylation haplotype blocks aids in deconvolution of heterogeneous tissue samples and tumor tissue-of-origin mapping from plasma DNA S Guo, D Diep, N Plongthongkum, HL Fung, K Zhang, K Zhang Nature genetics 49 (4), 635-642, 2017 | 192 | 2017 |
| Identification of a specific reprogramming-associated epigenetic signature in human induced pluripotent stem cells S Ruiz, D Diep, A Gore, AD Panopoulos, N Montserrat, N Plongthongkum, ... Proceedings of the National Academy of Sciences 109 (40), 16196-16201, 2012 | 168 | 2012 |
| Quantitative comparison of DNA methylation assays for biomarker development and clinical applications C Bock, F Halbritter, FJ Carmona, S Tierling, P Datlinger, Y Assenov, ... Nature biotechnology 34 (7), 726-737, 2016 | 116 | 2016 |
| Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage I Thiele, RMT Fleming, R Que, A Bordbar, D Diep, BO Palsson PloS one 7 (9), e45635, 2012 | 106 | 2012 |
| Library-free methylation sequencing with bisulfite padlock probes D Diep, N Plongthongkum, A Gore, HL Fung, R Shoemaker, K Zhang Nature methods 9 (3), 270-272, 2012 | 96 | 2012 |
| The Human Tumor Atlas Network: charting tumor transitions across space and time at single-cell resolution O Rozenblatt-Rosen, A Regev, P Oberdoerffer, T Nawy, A Hupalowska, ... Cell 181 (2), 236-249, 2020 | 39 | 2020 |
| Winston Timp, Héctor Corrada Bravo, Sarven Sabunciyan KD Hansen Benjamin Langmead, Oliver G. McDonald, Bo Wen, Hao Wu, Yun Liu, Dihn Diep …, 2011 | 25 | 2011 |
| Evolution of cellular diversity in primary motor cortex of human, marmoset monkey, and mouse TE Bakken, NL Jorstad, Q Hu, BB Lake, W Tian, BE Kalmbach, M Crow, ... bioRxiv, 2020 | 12 | 2020 |
| DNA methylation identifies genetically and prognostically distinct subtypes of myelodysplastic syndromes B Reilly, TN Tanaka, D Diep, H Yeerna, P Tamayo, K Zhang, R Bejar Blood advances 3 (19), 2845-2858, 2019 | 9 | 2019 |
| A multimodal cell census and atlas of the mammalian primary motor cortex RS Adkins, AI Aldridge, S Allen, SA Ament, X An, E Armand, GA Ascoli, ... bioRxiv, 2020 | 3 | 2020 |
| Large-scale targeted DNA methylation analysis using bisulfite padlock probes D Diep, N Plongthongkum, K Zhang DNA Methylation Protocols, 365-382, 2018 | 1 | 2018 |
| 5mC and 5hmC dynamics during PGC reprogramming and role of Tet1 in female meiosis S Yamaguchi, K Hong, R Liu, L Shen, A Inoue, D Diep, K Zhang, Y Zhang Epigenetics & Chromatin 6 (1), 1-1, 2013 | 1 | 2013 |
| Genome-wide analysis reveals TET-and TDG-mediated 5-methylcytosine oxidation dynamics L Shen, H Wu, D Diep, AC D’Alessio, A Fung, K Zhang, Y Zhang Epigenetics & Chromatin 6 (1), 1-1, 2013 | 1 | 2013 |
| Primordial germ cell derivation from mouse iPS cells and associated epigenetic changes X Li, J Deng, L Sun, D Diep, K Zhang, B Beutler Fertility and Sterility 94 (4), S241, 2010 | 1 | 2010 |
