Genetic meta-analysis of diagnosed Alzheimer’s disease identifies new risk loci and implicates Aβ, tau, immunity and lipid processing BW Kunkle, B Grenier-Boley, R Sims, JC Bis, V Damotte, AC Naj, ... Nature genetics 51 (3), 414-430, 2019 | 532 | 2019 |
Dysregulation of the epigenetic landscape of normal aging in Alzheimer’s disease R Nativio, G Donahue, A Berson, Y Lan, A Amlie-Wolf, F Tuzer, JB Toledo, ... Nature neuroscience 21 (4), 497-505, 2018 | 93 | 2018 |
DASHR: database of small human noncoding RNAs YY Leung, PP Kuksa, A Amlie-Wolf, O Valladares, LH Ungar, S Kannan, ... Nucleic acids research 44 (D1), D216-D222, 2016 | 62 | 2016 |
Transcriptomic changes due to cytoplasmic TDP-43 expression reveal dysregulation of histone transcripts and nuclear chromatin A Amlie-Wolf, P Ryvkin, R Tong, I Dragomir, ER Suh, Y Xu, ... PLoS One 10 (10), 2015 | 33 | 2015 |
Loss of Nuclear TDP-43 Is Associated with Decondensation of LINE Retrotransposons EY Liu, J Russ, CP Cali, JM Phan, A Amlie-Wolf, EB Lee Cell reports 27 (5), 1409-1421. e6, 2019 | 31 | 2019 |
DASHR 2.0: integrated database of human small non-coding RNA genes and mature products PP Kuksa, A Amlie-Wolf, Z Katanic, O Valladares, LS Wang, YY Leung Bioinformatics 1, 7, 2018 | 29 | 2018 |
Alzheimer Disease Genetics Consortium (ADGC); European Alzheimer’s Disease Initiative (EADI); Cohorts for Heart and Aging Research in Genomic Epidemiology Consortium (CHARGE … BW Kunkle, B Grenier-Boley, R Sims, JC Bis, V Damotte, AC Naj, ... Nat. Genet 51, 414-430, 0 | 25* | |
INFERNO: inferring the molecular mechanisms of noncoding genetic variants A Amlie-Wolf, M Tang, EE Mlynarski, PP Kuksa, O Valladares, Z Katanic, ... Nucleic Acids Research, 2018 | 23 | 2018 |
SPAR: small RNA-seq portal for analysis of sequencing experiments PP Kuksa, A Amlie-Wolf, Ž Katanić, O Valladares, LS Wang, YY Leung Nucleic acids research 46 (W1), W36-W42, 2018 | 8 | 2018 |
Inferring the molecular mechanisms of noncoding Alzheimer’s disease-associated genetic variants A Amlie-Wolf, M Tang, J Way, B Dombroski, M Jiang, N Vrettos, YF Chou, ... Journal of Alzheimer's Disease 72 (1), 301-318, 2019 | 7 | 2019 |
Activity of the poly (A) binding protein MSUT2 determines susceptibility to pathological tau in the mammalian brain JM Wheeler, P McMillan, TJ Strovas, NF Liachko, A Amlie-Wolf, RL Kow, ... Science Translational Medicine 11 (523), 2019 | 5 | 2019 |
SparkINFERNO: A scalable high-throughput pipeline for inferring molecular mechanisms of non-coding genetic variants PP Kuksa, CY Lee, A Amlie-Wolf, P Gangadharan, EE Mlynarski, YF Chou, ... bioRxiv, 2020 | 2 | 2020 |
HIPPIE2: a method for fine-scale identification of physically interacting chromatin regions PP Kuksa, A Amlie-Wolf, YC Hwang, O Valladares, BD Gregory, LS Wang NAR genomics and bioinformatics 2 (2), lqaa022, 2020 | | 2020 |
INFERRING THE NONCODING REGULATORY MECHANISMS UNDERLYING GENETIC SUSCEPTIBILITY CONTRIBUTED BY DIFFERENT CSF ENDOPHENOTYPES IN AD YY Leung, A Amlie-Wolf, LS Wang, GD Schellenberg Alzheimer's & Dementia: The Journal of the Alzheimer's Association 15 (7), P977, 2019 | | 2019 |
Development and Application of Computational Methods for Inferring the Molecular Mechanisms of Noncoding Genetic Variants A Amlie-Wolf University of Pennsylvania, 2019 | | 2019 |
INFERRING THE MOLECULAR MECHANISMS OF NONCODING AD-ASSOCIATED GENETIC VARIANTS A Amlie-Wolf, M Tang, BA Dombroski, J Way, N Vrettos, YF Chou, ... Alzheimer's & Dementia: The Journal of the Alzheimer's Association 14 (7 …, 2018 | | 2018 |
Molecular phenotyping of human neurons with TDP-43 pathology reveals decondensation of transposable elements E Liu, J Russ, A Amlie-Wolf, E Lee JOURNAL OF NEUROPATHOLOGY AND EXPERIMENTAL NEUROLOGY 77 (6), 510-511, 2018 | | 2018 |
COMPUTATIONAL IDENTIFICATION OF REGULATORY MECHANISMS AFFECTED BY NONCODING VARIANTS ASSOCIATED WITH LATE-ONSET ALZHEIMER'S DISEASE A Amlie-Wolf, M Tang, J King, BA Dombroski, LS Wang, GD Schellenberg Alzheimer's & Dementia: The Journal of the Alzheimer's Association 12 (7 …, 2016 | | 2016 |
A Swarm of Salesman: Algorithmic Approaches to Multiagent Modeling A Amlie-Wolf Oberlin College, 2013 | | 2013 |