Vasilis J. Promponas

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STAVROS HAMODRAKASVerified email at biol.uoa.gr
Christos Α. OuzounisAUTH, Thessalonica, Greece • CERTH, Thessalonica, GreeceVerified email at csd.auth.gr
Claude PasquierUniversité Côte d’Azur, CNRS, I3S, FranceVerified email at univ-cotedazur.fr
Ioannis IliopoulosAssociate Professor Medical School University of CreteVerified email at med.uoc.gr
Miguel AndradeJohannes-Gutenberg University in MainzVerified email at uni-mainz.de
Ioanna KalvariEuropean Bioinformatics InstituteVerified email at ebi.ac.uk
Agathoklis PapadopoulosVerified email at u-tx.com
Sophia TsokaKing's College LondonVerified email at kcl.ac.uk
Pablo MierUniversity of MainzVerified email at uni-mainz.de
Theocharis (Theo) TheocharidesAssociate Professor of ECE , KIOS Center of Excellence, University of CyprusVerified email at ucy.ac.cy
Nikolas PapanikolaouUniversity of CreteVerified email at uoc.gr
Chris ChristodoulouProfessor, Department of Computer Science, University of CyprusVerified email at cs.ucy.ac.cy
Constantinos S. PattichisProf. of Computer Science, University of Cyprus & HealthXR Group, CYENS Centre of Excellence, CYPRUSVerified email at ucy.ac.cy
Aleksandra GrucaAssociate Professor, Silesian University of TechnologyVerified email at polsl.pl
Marcin GrynbergInstitute of Biochemistry and BiophysicsVerified email at ibb.waw.pl
Chris SanderDana-Farber Cancer Institute, Harvard Medical School, Broad Institute, Memorial Sloan KetteringVerified email at sanderlab.org
Anton EnrightGroup Leader, Department of Pathology, University of CambridgeVerified email at cam.ac.uk
Evangelos PafilisResearcher C, Hellenic Center Marine Research (HCMR)Verified email at hcmr.gr
Ioannis P. NezisProfessor of Cell Biology, University of WarwickVerified email at warwick.ac.uk
Silvio TosattoFull Professor of Bioinformatics, Department of Biomedical Sciences, University of PaduaVerified email at unipd.it

Vasilis J. Promponas

Assοciate Professor in Bioinformatics, University of Cyprus, Nicosia, Cyprus

Verified email at ucy.ac.cy

Bioinformatics Computational Biology


Title Sort by citations Sort by year Sort by title	Cited by Cited by	Year
Guidelines for the use and interpretation of assays for monitoring autophagy DJ Klionsky, K Abdelmohsen, A Abe, MJ Abedin, H Abeliovich, ... Autophagy 12 (1), 1-222, 2016	8601*	2016
A novel method for predicting transmembrane segments in proteins based on a statistical analysis of the SwissProt database: the PRED-TMR algorithm C Pasquier, VJ Promponas, GA Palaios, JS Hamodrakas, SJ Hamodrakas Protein Engineering 12 (5), 381-385, 1999	198	1999
CAST: an iterative algorithm for the complexity analysis of sequence tracts VJ Promponas, AJ Enright, S Tsoka, DP Kreil, C Leroy, S Hamodrakas, ... Bioinformatics 16 (10), 915-922, 2000	195	2000
iLIR: a web resource for prediction of Atg8-family interacting proteins I Kalvari, S Tsompanis, NC Mulakkal, R Osgood, T Johansen, IP Nezis, ... Autophagy 10 (5), 2014	157	2014
DisProt: intrinsic protein disorder annotation in 2020 A Hatos, B Hajdu-Soltész, AM Monzon, N Palopoli, L Álvarez, ... Nucleic acids research 48 (D1), D269-D276, 2020	147	2020
Tandem repeats lead to sequence assembly errors and impose multi-level challenges for genome and protein databases OK Tørresen, B Star, P Mier, MA Andrade-Navarro, A Bateman, P Jarnot, ... Nucleic acids research 47 (21), 10994-11006, 2019	117	2019
Evaluation of annotation strategies using an entire genome sequence I Iliopoulos, S Tsoka, MA Andrade, AJ Enright, M Carroll, P Poullet, ... Bioinformatics 19 (6), 717-726, 2003	115	2003
iLIR database: A web resource for LIR motif-containing proteins in eukaryotes AC Jacomin, S Samavedam, V Promponas, IP Nezis Autophagy 12 (10), 1945-1953, 2016	91	2016
Territorial dynamics of Mexican Ant‐thrushes Formicarius moniliger revealed by individual recognition of their songs ANG Kirschel, ML Cody, ZT Harlow, VJ Promponas, EE Vallejo, CE Taylor Ibis 153 (2), 255-268, 2011	82	2011
PRED-GPCR: GPCR recognition and family classification server PK Papasaikas, PG Bagos, ZI Litou, VJ Promponas, SJ Hamodrakas Nucleic acids research 32 (suppl_2), W380-W382, 2004	62	2004
Critical assessment of protein intrinsic disorder prediction M Necci, D Piovesan, SCE Tosatto Nature methods 18 (5), 472-481, 2021	61	2021
PRED‐CLASS: Cascading neural networks for generalized protein classification and genome‐wide applications C Pasquier, VJ Promponas, SJ Hamodrakas Proteins: Structure, Function, and Bioinformatics 44 (3), 361-369, 2001	51	2001
Disentangling the complexity of low complexity proteins P Mier, L Paladin, S Tamana, S Petrosian, B Hajdu-Soltész, A Urbanek, ... Briefings in Bioinformatics 21 (2), 458-472, 2020	46	2020
Clustering of biological time series by cepstral coefficients based distances A Savvides, VJ Promponas, K Fokianos Pattern Recognition 41 (7), 2398-2412, 2008	39	2008
Annotation inconsistencies beyond sequence similarity-based function prediction–phylogeny and genome structure VJ Promponas, I Iliopoulos, CA Ouzounis Standards in genomic sciences 10 (1), 108, 2015	34	2015
Biological information extraction and co-occurrence analysis GA Pavlopoulos, VJ Promponas, CA Ouzounis, I Iliopoulos Biomedical literature mining, 77-92, 2014	28	2014
Gene socialization: gene order, GC content and gene silencing in Salmonella N Papanikolaou, K Trachana, T Theodosiou, VJ Promponas, I Iliopoulos BMC genomics 10 (1), 1-10, 2009	28	2009
Low complexity regions in the proteins of prokaryotes perform important functional roles and are highly conserved C Ntountoumi, P Vlastaridis, D Mossialos, C Stathopoulos, I Iliopoulos, ... Nucleic acids research 47 (19), 9998-10009, 2019	26	2019
Functional genomics evidence unearths new moonlighting roles of outer ring coat nucleoporins KR Katsani, M Irimia, C Karapiperis, ZG Scouras, BJ Blencowe, ... Scientific reports 4, 4655, 2014	26	2014
BioTextQuest+: a knowledge integration platform for literature mining and concept discovery N Papanikolaou, GA Pavlopoulos, E Pafilis, T Theodosiou, R Schneider, ... Bioinformatics 30 (22), 3249-3256, 2014	25	2014

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