Tunca Dogan
Tunca Dogan
Assistant Professor, Institute of Informatics / Computer Science, Hacettepe University
Verified email at hacettepe.edu.tr - Homepage
Title
Cited by
Cited by
Year
UniProt: a hub for protein information
UniProt Consortium
Nucleic acids research 43 (D1), D204-D212, 2015
35692015
UniProt: the universal protein knowledgebase
UP Consortium
Nucleic acids research 45 (D1), D158-D169, 2016
3408*2016
UniProt: a worldwide hub of protein knowledge
UniProt Consortium
Nucleic acids research 47 (D1), D506-D515, 2019
17582019
Activities at the universal protein resource (UniProt)
UniProt Consortium
Nucleic acids research 42 (D1), D191-D198, 2014
12072014
An expanded evaluation of protein function prediction methods shows an improvement in accuracy
Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ...
Genome biology 17 (1), 1-19, 2016
2522016
Tools and data services registry: a community effort to document bioinformatics resources
J Ison, K Rapacki, H Ménager, M Kalaš, E Rydza, P Chmura, C Anthon, ...
Nucleic acids research 44 (D1), D38-D47, 2016
1092016
Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases
AS Rifaioglu, H Atas, MJ Martin, R Cetin-Atalay, V Atalay, T Doğan
Briefings in bioinformatics 20 (5), 1878–1912, 2019
802019
The UniProtKB guide to the human proteome
L Breuza, S Poux, A Estreicher, ML Famiglietti, M Magrane, M Tognolli, ...
Database 2016, bav120, 2016
802016
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome Biology 20, 244, 2019
602019
On expert curation and scalability: UniProtKB/Swiss-Prot as a case study
S Poux, CN Arighi, M Magrane, A Bateman, CH Wei, Z Lu, E Boutet, ...
Bioinformatics 33 (21), 3454-3460, 2017
472017
DEEPred: automated protein function prediction with multi-task feed-forward deep neural networks
AS Rifaioglu, T Doğan, MJ Martin, R Cetin-Atalay, V Atalay
Scientific reports 9 (1), 1-16, 2019
24*2019
ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature
A Dalkiran, AS Rifaioglu, MJ Martin, R Cetin-Atalay, V Atalay, T Doğan
BMC bioinformatics 19 (1), 1-13, 2018
232018
DEEPScreen: High Performance Drug-Target Interaction Prediction with Convolutional Neural Networks Using 2-D Structural Compound Representations
A Rifaioglu, E Sinoplu, V Atalay, M Martin, R Cetin-Atalay, T Dogan
Chemical Science 11 (9), 2531-2557, 2020
192020
UniProt-DAAC: domain architecture alignment and classification, a new method for automatic functional annotation in UniProtKB
T Doğan, A MacDougall, R Saidi, D Poggioli, A Bateman, C O’Donovan, ...
Bioinformatics 32 (15), 2264-2271, 2016
172016
HPO2GO: prediction of human phenotype ontology term associations for proteins using cross ontology annotation co-occurrences
T Doğan
PeerJ 6 (e5298), 2018
9*2018
From the research laboratory to the database: the Caenorhabditis elegans kinome in UniProtKB
R Zaru, M Magrane, C O'Donovan, UniProt Consortium
Biochemical Journal 474 (4), 493-515, 2017
82017
Automatic identification of highly conserved family regions and relationships in genome wide datasets including remote protein sequences
T Doğan, B Karaçalı
PloS one 8 (9), e75458, 2013
62013
Large‐scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants
AS Rifaioglu, T Doğan, ÖS Saraç, T Ersahin, R Saidi, MV Atalay, ...
Proteins: Structure, Function, and Bioinformatics 86 (2), 135-151, 2018
52018
A Structural Perspective on Modulation of Protein-Protein Interactions with Small Molecules
HC Demirel, T Doğan, N Tuncbag
Current Topics in Medicinal Chemistry 18 (8), 700-713, 2018
52018
SPIN: Submitting sequences determined at protein level to UniProt
K Pichler, K Warner, M Magrane, UniProt Consortium
Current protocols in bioinformatics 62 (1), e52, 2018
32018
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