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Philipp C. Münch
Philipp C. Münch
Research Associate, Harvard School of Public Health & Helmholtz Centre for Infection Research
Verified email at hsph.harvard.edu - Homepage
Title
Cited by
Cited by
Year
Structure and function of the bacterial root microbiota in wild and domesticated barley
D Bulgarelli, R Garrido-Oter, PC Münch, A Weiman, J Dröge, Y Pan, ...
Cell host & microbe 17 (3), 392-403, 2015
12082015
Functional overlap of the Arabidopsis leaf and root microbiota
Y Bai, DB Müller, G Srinivas, R Garrido-Oter, E Potthoff, M Rott, ...
Nature 528 (7582), 364-369, 2015
10922015
Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium
S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ...
Nature microbiology 2 (2), 1-12, 2016
3722016
Survival trade-offs in plant roots during colonization by closely related beneficial and pathogenic fungi
S Hacquard, B Kracher, K Hiruma, PC Münch, R Garrido-Oter, MR Thon, ...
Nature communications 7 (1), 11362, 2016
2542016
Genomic variation and strain-specific functional adaptation in the human gut microbiome during early life
T Vatanen, DR Plichta, J Somani, PC Münch, TD Arthur, AB Hall, S Rudolf, ...
Nature microbiology 4 (3), 470-479, 2019
1902019
Reproducible colonization of germ-free mice with the oligo-mouse-microbiota in different animal facilities
C Eberl, D Ring, PC Münch, M Basic, M Schwarzer, A Lange, B Stecher
Frontiers in microbiology 10, 488258, 2020
852020
In vitro interaction network of a synthetic gut bacterial community
AS Weiss, AG Burrichter, AC Durai Raj, A von Strempel, C Meng, ...
The ISME journal 16 (4), 1095-1109, 2022
752022
Characterisation of a stable laboratory co-culture of acidophilic nanoorganisms
S Krause, A Bremges, PC Münch, AC McHardy, J Gescher
Scientific reports 7 (1), 3289, 2017
472017
Transcriptome-wide analysis uncovers the targets of the RNA-binding protein MSI2 and effects of MSI2's RNA-binding activity on IL-6 signaling
S Duggimpudi, A Kloetgen, SK Maney, PC Münch, K Hezaveh, ...
Journal of Biological Chemistry 293 (40), 15359-15369, 2018
352018
Genome-guided design of a defined mouse microbiota that confers colonization resistance against Salmonella enterica serovar Typhimurium. Nat Microbiol 2: 16215
S Brugiroux, M Beutler, C Pfann, D Garzetti, HJ Ruscheweyh, D Ring, ...
342016
Rapid and accurate identification of ribosomal RNA sequences via deep learning
ZL Deng, PC Münch, R Mreches, AC McHardy
Nucleic acids research 50 (10), e60-e60, 2022
272022
Biochemical and bioinformatic methods for elucidating the role of RNA–protein interactions in posttranscriptional regulation
A Kloetgen, PC Muench, A Borkhardt, JI Hoell, AC McHardy
Briefings in functional genomics 14 (2), 102-114, 2015
192015
Evaluating assembly and variant calling software for strain-resolved analysis of large DNA viruses
ZL Deng, A Dhingra, A Fritz, J Götting, PC Münch, L Steinbrück, TF Schulz, ...
Briefings in bioinformatics 22 (3), bbaa123, 2021
182021
DiTaxa: nucleotide-pair encoding of 16S rRNA for host phenotype and biomarker detection
E Asgari, PC Münch, TR Lesker, AC McHardy, MRK Mofrad
Bioinformatics 35 (14), 2498-2500, 2019
18*2019
Identification of natural CRISPR systems and targets in the human microbiome
PC Münch, EA Franzosa, B Stecher, AC McHardy, C Huttenhower
Cell host & microbe 29 (1), 94-106. e4, 2021
172021
Strain identification and quantitative analysis in microbial communities
AR Ghazi, PC Münch, D Chen, J Jensen, C Huttenhower
Journal of Molecular Biology 434 (15), 167582, 2022
162022
Neither black nor white: do altered intestinal microbiota reflect chronic liver disease severity?
F Goeser, P Münch, TR Lesker, PL Lutz, B Krämer, DJ Kaczmarek, ...
Gut 70 (2), 438-440, 2021
92021
Evolutionary stabilization of cooperative toxin production through a bacterium-plasmid-phage interplay
S Spriewald, E Stadler, BA Hense, PC Münch, AC McHardy, AS Weiss, ...
MBio 11 (4), 10.1128/mbio. 00912-20, 2020
82020
A self-supervised deep learning method for data-efficient training in genomics
HA Gündüz, M Binder, XY To, R Mreches, B Bischl, AC McHardy, ...
Communications Biology 6 (1), 928, 2023
5*2023
Pulsed antibiotic treatments of gnotobiotic mice manifest in complex bacterial community dynamics and resistance effects
PC Münch, C Eberl, S Woelfel, D Ring, A Fritz, S Herp, I Lade, R Geffers, ...
Cell Host & Microbe 31 (6), 1007-1020. e4, 2023
32023
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