| The sequence of the human genome JC Venter, MD Adams, EW Myers, PW Li, RJ Mural, GG Sutton, HO Smith, ... science 291 (5507), 1304-1351, 2001 | 17688 | 2001 |
| Transforming cabbage into turnip: polynomial algorithm for sorting signed permutations by reversals S Hannenhalli, PA Pevzner Journal of the ACM (JACM) 46 (1), 1-27, 1999 | 1111 | 1999 |
| The evolution of Fox genes and their role in development and disease S Hannenhalli, KH Kaestner Nature Reviews Genetics 10 (4), 233-240, 2009 | 552 | 2009 |
| Genome-wide analysis of retroviral DNA integration F Bushman, M Lewinski, A Ciuffi, S Barr, J Leipzig, S Hannenhalli, ... Nature reviews microbiology 3 (11), 848-858, 2005 | 484 | 2005 |
| Transforming men into mice (polynomial algorithm for genomic distance problem) S Hannenhalli, PA Pevzner Proceedings of IEEE 36th annual foundations of computer science, 581-592, 1995 | 448 | 1995 |
| Retroviral DNA integration: viral and cellular determinants of target-site selection MK Lewinski, M Yamashita, M Emerman, A Ciuffi, H Marshall, G Crawford, ... PLoS pathog 2 (6), e60, 2006 | 421 | 2006 |
| Analysis and prediction of functional sub-types from protein sequence alignments SS Hannenhalli, RB Russell Journal of molecular biology 303 (1), 61-76, 2000 | 305 | 2000 |
| Genome-wide analysis of chromosomal features repressing human immunodeficiency virus transcription MK Lewinski, D Bisgrove, P Shinn, H Chen, C Hoffmann, S Hannenhalli, ... Journal of virology 79 (11), 6610-6619, 2005 | 297 | 2005 |
| Whole-genome shotgun assembly and comparison of human genome assemblies S Istrail, GG Sutton, L Florea, AL Halpern, CM Mobarry, R Lippert, ... Proceedings of the National Academy of Sciences 101 (7), 1916-1921, 2004 | 242 | 2004 |
| Selection of target sites for mobile DNA integration in the human genome C Berry, S Hannenhalli, J Leipzig, FD Bushman PLoS Comput Biol 2 (11), e157, 2006 | 231 | 2006 |
| Polynomial-time algorithm for computing translocation distance between genomes S Hannenhalli Discrete applied mathematics 71 (1-3), 137-151, 1996 | 227 | 1996 |
| 1.375-approximation algorithm for sorting by reversals P Berman, S Hannenhalli, M Karpinski European Symposium on Algorithms, 200-210, 2002 | 225 | 2002 |
| Fast sorting by reversal P Berman, S Hannenhalli Annual Symposium on Combinatorial Pattern Matching, 168-185, 1996 | 195 | 1996 |
| CLINICAL PERSPECTIVE S Hannenhalli, ME Putt, JM Gilmore, J Wang, MS Parmacek, JA Epstein, ... Circulation 114 (12), 1269-1276, 2006 | 177 | 2006 |
| Genome sequence comparison and scenarios for gene rearrangements: A test case S Hannenhalli, C Chappey, EV Koonin, PA Pevzner Genomics 30 (2), 299-311, 1995 | 173 | 1995 |
| Promoter prediction in the human genome S Hannenhalli, S Levy Bioinformatics 17 (suppl_1), S90-S96, 2001 | 153 | 2001 |
| Enrichment of regulatory signals in conserved non-coding genomic sequence S Levy, S Hannenhalli, C Workman Bioinformatics 17 (10), 871-877, 2001 | 150 | 2001 |
| Eukaryotic transcription factor binding sites—modeling and integrative search methods S Hannenhalli Bioinformatics 24 (11), 1325-1331, 2008 | 139 | 2008 |
| Local rules for protein folding on a triangular lattice and generalized hydrophobicity in the HP model R Agarwala, S Batzoglou, V Dančik, SE Decatur, S Hannenhalli, M Farach, ... Journal of Computational Biology 4 (3), 275-296, 1997 | 133 | 1997 |
| Identification of transcription factor binding sites in the human genome sequence S Levy, S Hannenhalli Mammalian Genome 13 (9), 510-514, 2002 | 131 | 2002 |
