| Stochastic roadmap simulation: An efficient representation and algorithm for analyzing molecular motion MS Apaydin, DL Brutlag, C Guestrin, D Hsu, JC Latombe, C Varma Journal of Computational Biology 10 (3-4), 257-281, 2003 | 185 | 2003 |
| Capturing molecular energy landscapes with probabilistic conformational roadmaps MS Apaydin, AP Singh, DL Brutlag, JC Latombe Proceedings 2001 ICRA. IEEE International Conference on Robotics and …, 2001 | 66 | 2001 |
| An optimal procedure for gap closing in whole genome shotgun sequencing R Beigel, N Alon, S Kasif, MS Apaydin, L Fortnow Proceedings of the fifth annual international conference on Computational …, 2001 | 59 | 2001 |
| A deep learning approach to sentiment analysis in Turkish B Ciftci, MS Apaydin 2018 International Conference on Artificial Intelligence and Data Processing …, 2018 | 37 | 2018 |
| Structure-based protein NMR assignments using native structural ensembles MS Apaydın, V Conitzer, BR Donald Journal of Biomolecular NMR 40, 263-276, 2008 | 37 | 2008 |
| Using stochastic roadmap simulation to predict experimental quantities in protein folding kinetics: folding rates and phi-values TH Chiang, MS Apaydin, DL Brutlag, D Hsu, JC Latombe Journal of Computational Biology 14 (5), 578-593, 2007 | 35 | 2007 |
| Stochastic roadmap simulation for the study of ligand-protein interactions MS Apaydın, CE Guestrin, C Varma, DL Brutlag, JC Latombe Bioinformatics 1 (1), 1-8, 2002 | 35 | 2002 |
| A tabu search approach for the NMR protein structure-based assignment problem G Cavuslar, B Çatay, MS Apaydin IEEE/ACM transactions on computational biology and bioinformatics 9 (06 …, 2012 | 25 | 2012 |
| NVR-BIP: nuclear vector replacement using binary integer programming for NMR structure-based assignments MS Apaydin, B Çatay, N Patrick, BR Donald The Computer Journal 54 (5), 708-716, 2011 | 22 | 2011 |
| Stochastic conformational roadmaps for computing ensemble properties of molecular motion MS Apaydın, DL Brutlag, C Guestrin, D Hsu, JC Latombe Algorithmic Foundations of Robotics V, 131-147, 2004 | 20 | 2004 |
| Predicting experimental quantities in protein folding kinetics using stochastic roadmap simulation TH Chiang, MS Apaydin, DL Brutlag, D Hsu, JC Latombe Research in Computational Molecular Biology: 10th Annual International …, 2006 | 17 | 2006 |
| An ant colony optimization approach for solving the nuclear magnetic resonance structure based assignment problem J Aslanov, B Çatay, MS Apaydin Proceedings of the 15th annual conference companion on Genetic and …, 2013 | 4 | 2013 |
| Incorporating amino acid typing into nuclear magnetic resonance protein structure-based assignments H Erdogan, MS Apaydin Proteom. Bioinform 5, 116-121, 2012 | 4 | 2012 |
| A new approach to determine traffic peak periods to utilize in transportation planning A Saracoglu, H Ozen, MS Apaydin, A Maltas Arabian Journal for Science and Engineering, 1-10, 2021 | 3 | 2021 |
| Studying protein-ligand interactions with stochastic roadmap simulation M Apaydin, C Guestrin, C Varma, D Brutlag, J Latombe Bioinformatics 18 (2), 18-26, 2002 | 3 | 2002 |
| PROGRESS IN NUCLEAR VECTOR REPLACEMENT FOR NMR PROTEIN STRUCTURE-BASED ASSIGNMENTS S Cetinkaya, SN Ekren, MS Apaydin RAIRO-OPERATIONS RESEARCH 50 (2), 341-349, 2016 | 2 | 2016 |
| Automating unambiguous NOE data usage in NVR for NMR protein structure-based assignments M Akhmedov, B Çatay, MS Apaydın Journal of Bioinformatics and Computational Biology 13 (06), 1550020, 2015 | 2 | 2015 |
| Traffic speed prediction with neural networks UC Çakmak, MS Apaydın, B Çatay Operations Research Proceedings 2017: Selected Papers of the Annual …, 2018 | 1 | 2018 |
| Distinguishing the type of NOE for NMR protein structure-based assignments M Akhmedov, B Çatay, MS Apaydın 2013 21st Signal Processing and Communications Applications Conference (SIU …, 2013 | 1 | 2013 |
| Using amino acid typing to improve the accuracy of NMR structure based assignments H Erdoğan, MS Apaydin 2010 5th International Symposium on Health Informatics and Bioinformatics …, 2010 | 1 | 2010 |
David HsuProfessor of Computer Science, National University of SingaporeVerified email at comp.nus.edu.sg
