Marina Sirota
Marina Sirota
Associate Professor, Bakar Computational Health Sciences Institute, UCSF
Verified email at ucsf.edu
Title
Cited by
Cited by
Year
Evolution of genes and genomes on the Drosophila phylogeny
Drosophila 12 Genomes Consortium
Nature 450 (7167), 203, 2007
19442007
Ten years of pathway analysis: current approaches and outstanding challenges
P Khatri, M Sirota, AJ Butte
PLoS Comput Biol 8 (2), e1002375, 2012
12532012
Identifying a high fraction of the human genome to be under selective constraint using GERP++
EV Davydov, DL Goode, M Sirota, GM Cooper, A Sidow, S Batzoglou
PLoS Comput Biol 6 (12), e1001025, 2010
11662010
Discovery and preclinical validation of drug indications using compendia of public gene expression data
M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ...
Science translational medicine 3 (96), 96ra77-96ra77, 2011
6082011
Systematic pan-cancer analysis of tumour purity
D Aran, M Sirota, AJ Butte
Nature communications 6 (1), 1-12, 2015
4752015
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ...
Science translational medicine 3 (96), 96ra76-96ra76, 2011
4522011
B cell exchange across the blood-brain barrier in multiple sclerosis
H von Büdingen, TC Kuo, M Sirota, CJ van Belle, L Apeltsin, J Glanville, ...
The Journal of Clinical Investigation, 2012
1802012
Immunoglobulin class-switched B cells form an active immune axis between CNS and periphery in multiple sclerosis
A Palanichamy, L Apeltsin, TC Kuo, M Sirota, S Wang, SJ Pitts, ...
Science translational medicine 6 (248), 248ra106-248ra106, 2014
1682014
Autoimmune disease classification by inverse association with SNP alleles
M Sirota, MA Schaub, S Batzoglou, WH Robinson, AJ Butte
PLoS Genet 5 (12), e1000792, 2009
1652009
Comprehensive analysis of normal adjacent to tumor transcriptomes
D Aran, R Camarda, J Odegaard, H Paik, B Oskotsky, G Krings, A Goga, ...
Nature communications 8 (1), 1-14, 2017
1602017
Non-synonymous and synonymous coding SNPs show similar likelihood and effect size of human disease association
R Chen, EV Davydov, M Sirota, AJ Butte
PloS one 5 (10), e13574, 2010
1502010
Expression-based genome-wide association study links the receptor CD44 in adipose tissue with type 2 diabetes
K Kodama, M Horikoshi, K Toda, S Yamada, K Hara, J Irie, M Sirota, ...
Proceedings of the National Academy of Sciences 109 (18), 7049-7054, 2012
1282012
CONTRAST: a discriminative, phylogeny-free approach to multiple informant de novogene prediction
SS Gross, CB Do, M Sirota, S Batzoglou
Genome biology 8 (12), R269, 2007
1172007
Cross-tissue analysis of gene and protein expression in normal and cancer tissues
I Kosti, N Jain, D Aran, AJ Butte, M Sirota
Scientific reports 6 (1), 1-16, 2016
1002016
Reversal of cancer gene expression correlates with drug efficacy and reveals therapeutic targets
B Chen, L Ma, H Paik, M Sirota, W Wei, MS Chua, S So, AJ Butte
Nature communications 8 (1), 1-12, 2017
762017
Drug discovery in a multidimensional world: systems, patterns, and networks
JT Dudley, E Schadt, M Sirota, AJ Butte, E Ashley
Journal of cardiovascular translational research 3 (5), 438-447, 2010
672010
Environmental influences on reproductive health: the importance of chemical exposures
A Wang, A Padula, M Sirota, TJ Woodruff
Fertility and sterility 106 (4), 905-929, 2016
602016
Sex differences in disease risk from reported genome-wide association study findings
LY Liu, MA Schaub, M Sirota, AJ Butte
Human genetics 131 (3), 353-364, 2012
572012
Relating hepatocellular carcinoma tumor samples and cell lines using gene expression data in translational research
B Chen, M Sirota, H Fan-Minogue, D Hadley, AJ Butte
BMC medical genomics 8 (S2), S5, 2015
562015
Multiomics modeling of the immunome, transcriptome, microbiome, proteome and metabolome adaptations during human pregnancy
MS Ghaemi, DB DiGiulio, K Contrepois, B Callahan, TTM Ngo, ...
Bioinformatics 35 (1), 95-103, 2019
502019
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