Jie Wu
Jie Wu
Philips Research North America
Verified email at philips.com - Homepage
Title
Cited by
Cited by
Year
Integrative analysis of 111 reference human epigenomes
A Kundaje, W Meuleman, J Ernst, M Bilenky, A Yen, A Heravi-Moussavi, ...
Nature 518 (7539), 317-330, 2015
35062015
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
5142013
The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult
B Zhang, G Arun, YS Mao, Z Lazar, G Hung, G Bhattacharjee, X Xiao, ...
Cell reports 2 (1), 111-123, 2012
4372012
Single cell sequencing reveals low levels of aneuploidy across mammalian tissues
KA Knouse, J Wu, CA Whittaker, A Amon
Proceedings of the National Academy of Sciences 111 (37), 13409-13414, 2014
1952014
SRSF1-Regulated Alternative Splicing in Breast Cancer
O Anczuków, M Akerman, A Cléry, J Wu, C Shen, NH Shirole, A Raimer, ...
Molecular Cell 60 (1), 105-117, 2015
1482015
OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds
J Wu, O Anczuków, AR Krainer, MQ Zhang, C Zhang
Nucleic acids research 41 (10), 5149-5163, 2013
1122013
SpliceTrap: a method to quantify alternative splicing under single cellular conditions
J Wu, M Akerman, S Sun, WR McCombie, AR Krainer, MQ Zhang
Bioinformatics 27 (21), 3010-3016, 2011
992011
Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators
Q Yan, SM Weyn-Vanhentenryck, J Wu, SA Sloan, Y Zhang, K Chen, ...
Proceedings of the National Academy of Sciences 112 (11), 3445-3450, 2015
902015
Assessment of megabase-scale somatic copy number variation using single cell sequencing
KA Knouse, J Wu, A Amon
Genome Research, gr. 198937.115, 2016
662016
Comparative genomics and transcriptomics of Pichia pastoris
KR Love, KA Shah, CA Whittaker, J Wu, MC Bartlett, D Ma, RL Leeson, ...
BMC Genomics 17, 2016
612016
Chd5 orchestrates chromatin remodelling during sperm development
W Li, J Wu, SY Kim, M Zhao, SA Hearn, MQ Zhang, ML Meistrich, AA Mills
Nature communications 5, 2014
602014
DAZL Limits Pluripotency, Differentiation, and Apoptosis in Developing Primordial Germ Cells
HH Chen, M Welling, DB Bloch, J Muñoz, E Mientjes, X Chen, C Tramp, ...
Stem cell reports 3 (5), 892-904, 2014
592014
Direct cloning of double-stranded RNAs from RNase protection analysis reveals processing patterns of C/D box snoRNAs and provides evidence for widespread antisense transcript …
M Shen, E Eyras, J Wu, A Khanna, S Josiah, M Rederstorff, MQ Zhang, ...
Nucleic acids research 39 (22), 9720-9730, 2011
442011
BSSF: a fingerprint based ultrafast binding site similarity search and function analysis server
B Xiong, J Wu, DL Burk, M Xue, H Jiang, J Shen
BMC bioinformatics 11 (1), 47, 2010
272010
Next-generation sequencing reveals the biological significance of the N2, 3-ethenoguanine lesion in vivo
S Chang, BI Fedeles, J Wu, JC Delaney, D Li, L Zhao, PP Christov, E Yau, ...
Nucleic acids research, gkv243, 2015
262015
Distinct and predictive histone lysine acetylation patterns at promoters, enhancers, and gene bodies
N Rajagopal, J Ernst, P Ray, J Wu, M Zhang, M Kellis, B Ren
G3: Genes| Genomes| Genetics 4 (11), 2051-2063, 2014
232014
DrugViz: a Cytoscape plugin for visualizing and analyzing small molecule drugs in biological networks
B Xiong, K Liu, J Wu, DL Burk, H Jiang, J Shen
Bioinformatics 24 (18), 2117-2118, 2008
182008
Sheetspair: a database of amino acid pairs in protein sheet structures
N Zhang, J Ruan, J Wu, T Zhang
Data science journal 6, S589-S595, 2007
102007
A novel role for transcription-coupled nucleotide excision repair for the in vivo repair of 3, N 4-ethenocytosine
LD Samson
Nucleic Acids Research, 1, 2017
82017
1,3-Butadiene-induced adenine DNA adducts are genotoxic but only weakly mutagenic when replicated in Escherichia coli of various repair and replication …
S Chang, UI Seneviratne, J Wu, NY Tretyakova, JM Essigmann
Chemical Research in Toxicology, 2017
62017
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Articles 1–20