Justin B. Kinney
Title
Cited by
Cited by
Year
An index for 4 dimensional super conformal theories
JB Kinney, J Maldacena, S Minwalla, S Raju
Communications in Mathematical Physics 275 (1), 209-254, 2007
6432007
Systematic dissection and optimization of inducible enhancers in human cells using a massively parallel reporter assay
A Melnikov, A Murugan, X Zhang, T Tesileanu, L Wang, P Rogov, S Feizi, ...
Nature Biotechnology 30 (3), 271-277, 2012
4722012
Discovery of cancer drug targets by CRISPR-Cas9 screening of protein domains
J Shi, E Wang, JP Milazzo, Z Wang, JB Kinney, CR Vakoc
Nature Biotechnology 33, 661-667, 2015
4382015
Equitability, mutual information, and the maximal information coefficient
JB Kinney, GS Atwal
Proceedings of the National Academy of Sciences USA 111 (9), 3354-3359, 2014
2932014
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
2812013
Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
JB Kinney, A Murugan, CG Callan, EC Cox
Proceedings of the National Academy of Sciences USA 107 (20), 9158-9163, 2010
2252010
Energy-dependent fitness: a quantitative model for the evolution of yeast transcription factor binding sites
V Mustonen, J Kinney, CG Callan, M Lässig
Proceedings of the National Academy of Sciences USA 105 (34), 12376-12381, 2008
1142008
Precise physical models of protein–DNA interaction from high-throughput data
JB Kinney, G Tkačik, CG Callan
Proceedings of the National Academy of Sciences USA 104 (2), 501-506, 2007
742007
Rapid and tunable method to temporally control gene editing based on conditional Cas9 stabilization
S Senturk, NH Shirole, DG Nowak, V Corbo, D Pal, A Vaughan, ...
Nature Communications 8, 14370, 2017
622017
Domain within the helicase subunit Mcm4 integrates multiple kinase signals to control DNA replication initiation and fork progression
YJ Sheu, JB Kinney, A Lengronne, P Pasero, B Stillman
Proceedings of the National Academy of Sciences USA 111 (18), E1899-E1908, 2014
472014
Measuring the sequence-affinity landscape of antibodies with massively parallel titration curves
RM Adams, T Mora, AM Walczak, JB Kinney
Elife 5, e23156, 2016
462016
Systematic approach for dissecting the molecular mechanisms of transcriptional regulation in bacteria
NM Belliveau, SL Barnes, WT Ireland, DL Jones, MJ Sweredoski, ...
Proceedings of the National Academy of Sciences 115 (21), E4796-E4805, 2018
392018
r-modes in accreting neutron stars with magnetoviscous boundary layers
JB Kinney, G Mendell
Physical Review D 67, 024032, 2003
322003
Quantitative Activity Profile and Context Dependence of All Human 5′ Splice Sites
MS Wong, JB Kinney, AR Krainer
Molecular cell 71 (6), 1012-1026.e3, 2018
292018
The transcriptional cofactor TRIM33 prevents apoptosis in B lymphoblastic leukemia by deactivating a single enhancer
E Wang, S Kawaoka, JS Roe, J Shi, AF Hohmann, Y Xu, AS Bhagwat, ...
Elife 4, e06377, 2015
282015
Concerted activities of Mcm4, Sld3, and Dbf4 in control of origin activation and DNA replication fork progression
YJ Sheu, JB Kinney, B Stillman
Genome research 26 (3), 315-330, 2016
202016
Logomaker: beautiful sequence logos in Python
A Tareen, JB Kinney
Bioinformatics 36 (7), 2272-2274, 2020
182020
Massively parallel assays and quantitative sequence–function relationships
JB Kinney, DM McCandlish
Annual review of genomics and human genetics, 2019
182019
Comparison of the theoretical and real-world evolutionary potential of a genetic circuit
M Razo-Mejia, JQ Boedicker, D Jones, A DeLuna, JB Kinney, R Phillips
Physical Biology 11 (2), 026005, 2014
182014
Mapping DNA sequence to transcription factor binding energy in vivo
SL Barnes, NM Belliveau, WT Ireland, JB Kinney, R Phillips
PLoS computational biology 15 (2), e1006226, 2019
152019
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Articles 1–20