| Velvet: algorithms for de novo short read assembly using de Bruijn graphs DR Zerbino, E Birney Genome research 18 (5), 821-829, 2008 | 11066 | 2008 |
| Comprehensive molecular characterization of human colon and rectal cancer Cancer Genome Atlas Network Nature 487 (7407), 330, 2012 | 7384 | 2012 |
| Ensembl 2012 P Flicek, MR Amode, D Barrell, K Beal, S Brent, D Carvalho-Silva, ... Nucleic acids research, gkr991, 2011 | 4736 | 2011 |
| Comprehensive genomic characterization of squamous cell lung cancers Cancer Genome Atlas Research Network Nature 489 (7417), 519, 2012 | 3645 | 2012 |
| Genetic effects on gene expression across human tissues GTEx Consortium Lead analysts: Aguet François 1 Brown Andrew A. 2 3 4 Castel ... Nature 550 (7675), 204-213, 2017 | 3263 | 2017 |
| Ensembl 2018 DR Zerbino, P Achuthan, W Akanni, MR Amode, D Barrell, J Bhai, K Billis, ... Nucleic acids research 46 (D1), D754-D761, 2018 | 3029 | 2018 |
| GENCODE reference annotation for the human and mouse genomes A Frankish, M Diekhans, AM Ferreira, R Johnson, I Jungreis, J Loveland, ... Nucleic acids research 47 (D1), D766-D773, 2019 | 2571 | 2019 |
| The GTEx Consortium atlas of genetic regulatory effects across human tissues GTEx Consortium Science 369 (6509), 1318-1330, 2020 | 2443 | 2020 |
| Ensembl 2020 AD Yates, P Achuthan, W Akanni, J Allen, J Allen, J Alvarez-Jarreta, ... Nucleic acids research 48 (D1), D682-D688, 2020 | 1730 | 2020 |
| Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels MH Schulz, DR Zerbino, M Vingron, E Birney Bioinformatics 28 (8), 1086-1092, 2012 | 1699 | 2012 |
| Ensembl 2015 F Cunningham, MR Amode, D Barrell, K Beal, K Billis, S Brent, ... Nucleic acids research 43 (D1), D662-D669, 2015 | 1671 | 2015 |
| Ensembl 2016 A Yates, W Akanni, MR Amode, D Barrell, K Billis, D Carvalho-Silva, ... Nucleic acids research 44 (D1), D710-D716, 2016 | 1633 | 2016 |
| Ensembl 2021 KL Howe, P Achuthan, J Allen, J Allen, J Alvarez-Jarreta, MR Amode, ... Nucleic acids research 49 (D1), D884-D891, 2021 | 1456 | 2021 |
| Ensembl 2022 F Cunningham, JE Allen, J Allen, J Alvarez-Jarreta, MR Amode, ... Nucleic acids research 50 (D1), D988-D995, 2022 | 1328 | 2022 |
| Ensembl 2019 F Cunningham, P Achuthan, W Akanni, J Allen, MR Amode, IM Armean, ... Nucleic acids research 47 (D1), D745-D751, 2019 | 976 | 2019 |
| Lineage-specific genome architecture links enhancers and non-coding disease variants to target gene promoters BM Javierre, OS Burren, SP Wilder, R Kreuzhuber, SM Hill, S Sewitz, ... Cell 167 (5), 1369-1384. e19, 2016 | 964 | 2016 |
| Assessment of transcript reconstruction methods for RNA-seq T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ... Nature methods 10 (12), 1177-1184, 2013 | 765 | 2013 |
| GENCODE 2021 A Frankish, M Diekhans, I Jungreis, J Lagarde, JE Loveland, JM Mudge, ... Nucleic acids research 49 (D1), D916-D923, 2021 | 717 | 2021 |
| Using the Velvet de novo Assembler for Short‐Read Sequencing Technologies DR Zerbino Current protocols in bioinformatics 31 (1), 11.5. 1-11.5. 12, 2010 | 692 | 2010 |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 632 | 2011 |
