Takip et
Steven Lakin
Steven Lakin
Visiting Scientist, Colorado State University
colostate.edu üzerinde doğrulanmış e-posta adresine sahip - Ana Sayfa
Başlık
Alıntı yapanlar
Alıntı yapanlar
Yıl
MEGARes: an antimicrobial resistance database for high throughput sequencing
SM Lakin, C Dean, NR Noyes, A Dettenwanger, AS Ross, E Doster, ...
Nucleic acids research 45 (D1), D574-D580, 2017
2512017
MEGARes 2.0: a database for classification of antimicrobial drug, biocide and metal resistance determinants in metagenomic sequence data
E Doster, SM Lakin, CJ Dean, C Wolfe, JG Young, C Boucher, KE Belk, ...
Nucleic acids research 48 (D1), D561-D569, 2020
1192020
West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific flaviviruses, mononegaviruses, and totiviruses
JR Fauver, ND Grubaugh, BJ Krajacich, J Weger-Lucarelli, SM Lakin, ...
Virology 498, 288-299, 2016
942016
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
Microbiome 5 (1), 1-13, 2017
452017
Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems
P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ...
Frontiers in microbiology 10, 1980, 2019
432019
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period
E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ...
Frontiers in microbiology 9, 1715, 2018
392018
Horizontal Gene Transfer and Acquired Antibiotic Resistance in Salmonella enterica Serovar Heidelberg following In Vitro Incubation in Broiler Ceca
A Oladeinde, K Cook, SM Lakin, R Woyda, Z Abdo, T Looft, K Herrington, ...
Applied and environmental microbiology 85 (22), e01903-19, 2019
342019
Effects of a Saccharomyces cerevisiae fermentation product on liver abscesses, fecal microbiome, and resistome in feedlot cattle raised without antibiotics
KL Huebner, JN Martin, CJ Weissend, KL Holzer, JK Parker, SM Lakin, ...
Scientific reports 9 (1), 1-11, 2019
322019
Comparative diversity of microbiomes and Resistomes in beef feedlots, downstream environments and urban sewage influent
R Zaheer, SM Lakin, RO Polo, SR Cook, FJ Larney, PS Morley, ...
BMC microbiology 19 (1), 1-17, 2019
212019
Reused poultry litter microbiome with competitive exclusion potential against Salmonella Heidelberg
MG Bucher, B Zwirzitz, A Oladeinde, K Cook, C Plymel, G Zock, S Lakin, ...
Journal of Environmental Quality 49 (4), 869-881, 2020
162020
Hierarchical Hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
Communications biology 2 (1), 1-11, 2019
162019
Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella Enterica Serovar Heidelberg
A Oladeinde, Z Abdo, MO Press, K Cook, NA Cox, B Zwirzitz, R Woyda, ...
Msystems 6 (4), e00729-21, 2021
82021
Hierarchical hidden Markov models enable accurate and diverse detection of antimicrobial resistance sequences. Commun Biol 2: 294
SM Lakin, A Kuhnle, B Alipanahi, NR Noyes, C Dean, M Muggli, ...
72019
Enrichment allows identification of diverse, rare elements in metagenomic resistome-virulome sequencing. Microbiome 5: 142
NR Noyes, ME Weinroth, JK Parker, CJ Dean, SM Lakin, RA Raymond, ...
62017
II, Dabiré KR, Foy BD, Brackney DE, Ebel GD, Stenglein MD (2016) West African Anopheles gambiae mosquitoes harbor a taxonomically diverse virome including new insect-specific …
JR Fauver, ND Grubaugh, BJ Krajacich, J Weger-Lucarelli, SM Lakin, ...
Virology 498, 288-299, 0
6
Investigating effects of tulathromycin metaphylaxis on the fecal resistome and microbiome of commercial feedlot cattle early in the feeding period. Front Microbiol 9: 1715
E Doster, P Rovira, NR Noyes, BA Burgess, X Yang, MD Weinroth, ...
52018
Characterization of the microbial resistome in conventional and “raised without antibiotics” beef and dairy production systems. Front. Microbiol. 10: 1980
P Rovira, T McAllister, SM Lakin, SR Cook, E Doster, NR Noyes, ...
51980
Tychus: a whole genome sequencing pipeline for assembly, annotation and phylogenetics of bacterial genomes
C Dean, N Noyes, S Lakin, P Rovira-Sanz, X Yang, K Belk, PS Morley, ...
bioRxiv, 283101, 2018
22018
Erratum for Oladeinde et al.,“Horizontal Gene Transfer Is the Main Driver of Antimicrobial Resistance in Broiler Chicks Infected with Salmonella enterica Serovar Heidelberg”
A Oladeinde, Z Abdo, MO Press, K Cook, NA Cox, B Zwirzitz, R Woyda, ...
Msystems 6 (5), e01147-21, 2021
12021
Gene flux and acid-imposed selection are the main drivers of antimicrobial resistance in broiler chicks infected with Salmonella enterica serovar Heidelberg
A Oladeinde, Z Abdo, MO Press, K Cook, NA Cox, B Zwirzitz, R Woyda, ...
bioRxiv, 2021
12021
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