Nurcan Tuncbag
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The PI3K/AKT/mTOR interactive pathway
T Ersahin, N Tuncbag, R Cetin-Atalay
Molecular BioSystems 11 (7), 1946-1954, 2015
Predicting protein–protein interactions from the molecular to the proteome level
O Keskin, N Tuncbag, A Gursoy
Chemical reviews 116 (8), 4884-4909, 2016
Predicting protein-protein interactions on a proteome scale by matching evolutionary and structural similarities at interfaces using PRISM
N Tuncbag, A Gursoy, R Nussinov, O Keskin
Nature protocols 6 (9), 1341-1354, 2011
Identification of computational hot spots in protein interfaces: combining solvent accessibility and inter-residue potentials improves the accuracy
N Tuncbag, A Gursoy, O Keskin
Bioinformatics 25 (12), 1513-1520, 2009
HotPoint: hot spot prediction server for protein interfaces
N Tuncbag, O Keskin, A Gursoy
Nucleic acids research 38 (suppl_2), W402-W406, 2010
A survey of available tools and web servers for analysis of protein–protein interactions and interfaces
N Tuncbag, G Kar, O Keskin, A Gursoy, R Nussinov
Briefings in bioinformatics 10 (3), 217-232, 2009
Network-based interpretation of diverse high-throughput datasets through the omics integrator software package
N Tuncbag, SJC Gosline, A Kedaigle, AR Soltis, A Gitter, E Fraenkel
PLoS computational biology 12 (4), e1004879, 2016
HotSprint: database of computational hot spots in protein interfaces
E Guney, N Tuncbag, O Keskin, A Gursoy
Nucleic acids research 36 (suppl_1), D662-D666, 2007
Simultaneous reconstruction of multiple signaling pathways via the prize-collecting steiner forest problem
N Tuncbag, A Braunstein, A Pagnani, SSC Huang, J Chayes, C Borgs, ...
Journal of computational biology 20 (2), 124-136, 2013
Genome-scale networks link neurodegenerative disease genes to α-synuclein through specific molecular pathways
V Khurana, J Peng, CY Chung, PK Auluck, S Fanning, DF Tardiff, ...
Cell systems 4 (2), 157-170. e14, 2017
Architectures and functional coverage of protein–protein interfaces
N Tuncbag, A Gursoy, E Guney, R Nussinov, O Keskin
Journal of molecular biology 381 (3), 785-802, 2008
Towards inferring time dimensionality in protein–protein interaction networks by integrating structures: the p53 example
N Tuncbag, G Kar, A Gursoy, O Keskin, R Nussinov
Molecular Biosystems 5 (12), 1770-1778, 2009
SteinerNet: a web server for integrating ‘omic’data to discover hidden components of response pathways
N Tuncbag, S McCallum, SC Huang, E Fraenkel
Nucleic acids research 40 (W1), W505-W509, 2012
Prediction of protein–protein interactions: unifying evolution and structure at protein interfaces
N Tuncbag, A Gursoy, O Keskin
Physical biology 8 (3), 035006, 2011
Fast and accurate modeling of protein–protein interactions by combining template‐interface‐based docking with flexible refinement
N Tuncbag, O Keskin, R Nussinov, A Gursoy
Proteins: Structure, Function, and Bioinformatics 80 (4), 1239-1249, 2012
Characterization and prediction of protein interfaces to infer protein-protein interaction networks
O Keskin, N Tuncbag, A Gursoy
Current pharmaceutical biotechnology 9 (2), 67-76, 2008
Analysis and network representation of hotspots in protein interfaces using minimum cut trees
N Tuncbag, FS Salman, O Keskin, A Gursoy
Proteins: Structure, Function, and Bioinformatics 78 (10), 2283-2294, 2010
Functional constraints on replacing an essential gene with its ancient and modern homologs
B Kacar, E Garmendia, N Tuncbag, DI Andersson, D Hughes
MBio 8 (4), 10.1128/mbio. 01276-17, 2017
Network modeling identifies patient-specific pathways in glioblastoma
N Tuncbag, P Milani, JL Pokorny, H Johnson, TT Sio, S Dalin, ...
Scientific reports 6 (1), 28668, 2016
Systems-level Analysis Reveals Multiple Modulators of Epithelial-mesenchymal Transition and Identifies DNAJB4 and CD81 as Novel Metastasis Inducers in Breast Cancer*[S]
ZCU Kagiali, E Sanal, Karayel, AN Polat, Saatci, PG Ersan, K Trappe, ...
Molecular & Cellular Proteomics 18 (9), 1756-1771, 2019
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