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Rengul Cetin Atalay
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Diagnostic assessment of deep learning algorithms for detection of lymph node metastases in women with breast cancer
BE Bejnordi, M Veta, PJ Van Diest, B Van Ginneken, N Karssemeijer, ...
Jama 318 (22), 2199-2210, 2017
18212017
The PI3K/AKT/mTOR interactive pathway
T Ersahin, N Tuncbag, R Cetin-Atalay
Molecular BioSystems 11 (7), 1946-1954, 2015
2872015
Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases
AS Rifaioglu, H Atas, MJ Martin, R Cetin-Atalay, V Atalay, T Doğan
Briefings in bioinformatics 20 (5), 1878-1912, 2019
2182019
PATIKA: an integrated visual environment for collaborative construction and analysis of cellular pathways
E Demir, O Babur, U Dogrusoz, A Gursoy, G Nisanci, R Cetin-Atalay, ...
Bioinformatics 18 (7), 996-1003, 2002
2052002
The CAFA challenge reports improved protein function prediction and new functional annotations for hundreds of genes through experimental screens
N Zhou, Y Jiang, TR Bergquist, AJ Lee, BZ Kacsoh, AW Crocker, ...
Genome biology 20 (1), 1-23, 2019
2012019
Near‐IR absorbing BODIPY derivatives as glutathione‐activated photosensitizers for selective photodynamic action
IS Turan, FP Cakmak, DC Yildirim, R Cetin‐Atalay, EU Akkaya
Chemistry–A European Journal 20 (49), 16088-16092, 2014
1012014
DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations
AS Rifaioglu, E Nalbat, V Atalay, MJ Martin, R Cetin-Atalay, T Doğan
Chemical science 11 (9), 2531-2557, 2020
862020
Reprogramming of replicative senescence in hepatocellular carcinoma-derived cells
N Ozturk, E Erdal, M Mumcuoglu, KC Akcali, O Yalcin, S Senturk, ...
Proceedings of the National Academy of Sciences 103 (7), 2178-2183, 2006
812006
Diet affects gut microbiota and modulates hospitalization risk differentially in an international cirrhosis cohort
JS Bajaj, R Idilman, L Mabudian, M Hood, A Fagan, D Turan, MB White, ...
Hepatology 68 (1), 234-247, 2018
792018
An ontology for collaborative construction and analysis of cellular pathways
E Demir, O Babur, U Dogrusoz, A Gursoy, A Ayaz, G Gulesir, G Nisanci, ...
Bioinformatics 20 (3), 349-356, 2004
762004
Attributed relational graphs for cell nucleus segmentation in fluorescence microscopy images
S Arslan, T Ersahin, R Cetin-Atalay, C Gunduz-Demir
IEEE transactions on medical imaging 32 (6), 1121-1131, 2013
752013
Acquired tolerance of hepatocellular carcinoma cells to selenium deficiency: a selective survival mechanism?
MB Irmak, G Ince, M Ozturk, R Cetin-Atalay
Cancer Research 63 (20), 6707-6715, 2003
712003
Synthesis of novel diflunisal hydrazide–hydrazones as anti-hepatitis C virus agents and hepatocellular carcinoma inhibitors
S Şenkardeş, N Kaushik-Basu, I Durmaz, D Manvar, A Basu, R Atalay, ...
European journal of medicinal chemistry 108, 301-308, 2016
692016
DEEPred: automated protein function prediction with multi-task feed-forward deep neural networks
A Sureyya Rifaioglu, T Doğan, M Jesus Martin, R Cetin-Atalay, V Atalay
Scientific reports 9 (1), 1-16, 2019
642019
The AKT inhibitor MK-2206 is cytotoxic in hepatocarcinoma cells displaying hyperphosphorylated AKT-1 and synergizes with conventional chemotherapy
C Simioni, AM Martelli, A Cani, R Cetin-Atalay, JA McCubrey, S Capitani, ...
Oncotarget 4 (9), 1496, 2013
622013
Inhibition of Akt signaling in hepatoma cells induces apoptotic cell death independent of Akt activation status
F Buontempo, T Ersahin, S Missiroli, S Senturk, D Etro, M Ozturk, ...
Investigational new drugs 29 (6), 1303-1313, 2011
602011
ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature
A Dalkiran, AS Rifaioglu, MJ Martin, R Cetin-Atalay, V Atalay, T Doğan
BMC bioinformatics 19 (1), 1-13, 2018
592018
Genome-wide transcriptional reorganization associated with senescence-to-immortality switch during human hepatocellular carcinogenesis
G Yildiz, A Arslan-Ergul, S Bagislar, O Konu, H Yuzugullu, ...
PloS one 8 (5), e64016, 2013
582013
A novel form of recessive limb girdle muscular dystrophy with mental retardation and abnormal expression of α-dystroglycan
P Dinçer, B Balcı, Y Yuva, B Talim, M Brockington, D Dinçel, S Torelli, ...
Neuromuscular Disorders 13 (10), 771-778, 2003
582003
Synthesis and preliminary mechanistic evaluation of 5-(p-tolyl)-1-(quinolin-2-yl) pyrazole-3-carboxylic acid amides with potent antiproliferative activity on human cancer cell …
ŞC Pirol, B Çalışkan, İ Durmaz, R Atalay, E Banoglu
European Journal of Medicinal Chemistry 87, 140-149, 2014
542014
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