|An RNA-sequencing transcriptome and splicing database of glia, neurons, and vascular cells of the cerebral cortex|
Y Zhang, K Chen, SA Sloan, ML Bennett, AR Scholze, S O'Keeffe, ...
Journal of Neuroscience 34 (36), 11929-11947, 2014
|FMRP stalls ribosomal translocation on mRNAs linked to synaptic function and autism|
JC Darnell, SJ Van Driesche, C Zhang, KYS Hung, A Mele, CE Fraser, ...
Cell 146 (2), 247-261, 2011
|An increased specificity score matrix for the prediction of SF2/ASF-specific exonic splicing enhancers|
PJ Smith, C Zhang, J Wang, SL Chew, MQ Zhang, AR Krainer
Human molecular genetics 15 (16), 2490-2508, 2006
|The lncRNA Malat1 is dispensable for mouse development but its transcription plays a cis-regulatory role in the adult|
B Zhang, G Arun, YS Mao, Z Lazar, G Hung, G Bhattacharjee, X Xiao, ...
Cell reports 2 (1), 111-123, 2012
|Mapping in vivo protein-RNA interactions at single-nucleotide resolution from HITS-CLIP data|
C Zhang, RB Darnell
Nature biotechnology 29 (7), 607-614, 2011
|Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines|
JC Castle, C Zhang, JK Shah, AV Kulkarni, A Kalsotra, TA Cooper, ...
Nature genetics 40 (12), 1416-1425, 2008
|Dissecting the unique role of the retinoblastoma tumor suppressor during cellular senescence|
A Chicas, X Wang, C Zhang, M McCurrach, Z Zhao, O Mert, RA Dickins, ...
Cancer cell 17 (4), 376-387, 2010
|Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2|
C Zhang, Z Zhang, J Castle, S Sun, J Johnson, AR Krainer, MQ Zhang
Genes & development 22 (18), 2550-2563, 2008
|Integrative modeling defines the Nova splicing-regulatory network and its combinatorial controls|
C Zhang, MA Frias, A Mele, M Ruggiu, T Eom, CB Marney, H Wang, ...
Science 329 (5990), 439-443, 2010
|HITS-CLIP and Integrative Modeling Define the Rbfox Splicing-Regulatory Network Linked to Brain Development and Autism|
SM Weyn-Vanhentenryck, A Mele, Q Yan, S Sun, N Farny, Z Zhang, ...
Cell reports 6 (6), 1139-1152, 2014
|Muscleblind-like 2-mediated alternative splicing in the developing brain and dysregulation in myotonic dystrophy|
K Charizanis, KY Lee, R Batra, M Goodwin, C Zhang, Y Yuan, L Shiue, ...
Neuron 75 (3), 437-450, 2012
|Mapping Argonaute and conventional RNA-binding protein interactions with RNA at single-nucleotide resolution using HITS-CLIP and CIMS analysis|
MJ Moore, C Zhang, EC Gantman, A Mele, JC Darnell, RB Darnell
Nature protocols 9 (2), 263-293, 2014
|Loss of MBNL leads to disruption of developmentally regulated alternative polyadenylation in RNA-mediated disease|
R Batra, K Charizanis, M Manchanda, A Mohan, M Li, DJ Finn, ...
Molecular cell 56 (2), 311-322, 2014
|Ptbp2 represses adult-specific splicing to regulate the generation of neuronal precursors in the embryonic brain|
DD Licatalosi, M Yano, JJ Fak, A Mele, SE Grabinski, C Zhang, ...
Genes & development 26 (14), 1626-1642, 2012
|Neuronal Elav-like (Hu) proteins regulate RNA splicing and abundance to control glutamate levels and neuronal excitability|
G Ince-Dunn, HJ Okano, KB Jensen, WY Park, R Zhong, J Ule, A Mele, ...
Neuron 75 (6), 1067-1080, 2012
|RNA landscape of evolution for optimal exon and intron discrimination|
C Zhang, WH Li, AR Krainer, MQ Zhang
Proceedings of the National Academy of Sciences 105 (15), 5797-5802, 2008
|OLego: fast and sensitive mapping of spliced mRNA-Seq reads using small seeds|
J Wu, O Anczuków, AR Krainer, MQ Zhang, C Zhang
Nucleic acids research 41 (10), 5149-5163, 2013
|Profiling alternatively spliced mRNA isoforms for prostate cancer classification|
C Zhang, HR Li, JB Fan, J Wang-Rodriguez, T Downs, XD Fu, MQ Zhang
Bmc Bioinformatics 7 (1), 202, 2006
|Systematic discovery of regulated and conserved alternative exons in the mammalian brain reveals NMD modulating chromatin regulators|
Q Yan, SM Weyn-Vanhentenryck, J Wu, SA Sloan, Y Zhang, K Chen, ...
Proceedings of the National Academy of Sciences 112 (11), 3445-3450, 2015
|NOVA-dependent regulation of cryptic NMD exons controls synaptic protein levels after seizure|
T Eom, C Zhang, H Wang, K Lay, J Fak, JL Noebels, RB Darnell
Elife 2, e00178, 2013