Tobias Marschall
Title
Cited by
Cited by
Year
Whole-genome sequence variation, population structure and demographic history of the Dutch population
TG the Netherlands Consortium
Nature Genetics 46, 818-825, 2014
5432014
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome
AM Wenger, P Peluso, WJ Rowell, PC Chang, RJ Hall, GT Concepcion, ...
Nature biotechnology 37 (10), 1155-1162, 2019
3642019
Multi-platform discovery of haplotype-resolved structural variation in human genomes
MJP Chaisson, AD Sanders, X Zhao, A Malhotra, D Porubsky, T Rausch, ...
Nature communications 10 (1), 1-16, 2019
3422019
Genome-wide patterns and properties of de novo mutations in humans
LC Francioli, PP Polak, A Koren, A Menelaou, S Chun, I Renkens, ...
Nature Genetics 47 (7), 822-826, 2015
3092015
Eleven grand challenges in single-cell data science
D Lähnemann, J Köster, E Szczurek, DJ McCarthy, SC Hicks, ...
Genome biology 21 (1), 1-35, 2020
2442020
Deep sequencing reveals differential expression of microRNAs in favorable versus unfavorable neuroblastoma
JH Schulte, T Marschall, M Martin, P Rosenstiel, P Mestdagh, S Schlierf, ...
Nucleic acids research 38 (17), 5919-5928, 2010
2032010
Mapping and phasing of structural variation in patient genomes using nanopore sequencing
MC Stancu, MJ Van Roosmalen, I Renkens, MM Nieboer, S Middelkamp, ...
Nature communications 8 (1), 1-13, 2017
1922017
Computational pan-genomics: status, promises and challenges
T Marschall, M Marz, T Abeel, L Dijkstra, BE Dutilh, A Ghaffaari, P Kersey, ...
Briefings in Bioinformatics, 2016
184*2016
WhatsHap: weighted haplotype assembly for future-generation sequencing reads
M Patterson, T Marschall, N Pisanti, L Van Iersel, L Stougie, GW Klau, ...
Journal of Computational Biology 22 (6), 498-509, 2015
1472015
Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes
K Shafin, T Pesout, R Lorig-Roach, M Haukness, HE Olsen, C Bosworth, ...
Nature biotechnology 38 (9), 1044-1053, 2020
124*2020
Characteristics of de novo structural changes in the human genome
WP Kloosterman, LC Francioli, F Hormozdiari, T Marschall, JY Hehir-Kwa, ...
Genome research 25 (6), 792-801, 2015
1172015
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
102*2020
CLEVER: clique-enumerating variant finder
T Marschall, IG Costa, S Canzar, M Bauer, GW Klau, A Schliep, ...
Bioinformatics 28 (22), 2875-2882, 2012
972012
Viral quasispecies assembly via maximal clique enumeration
A Töpfer, T Marschall, RA Bull, F Luciani, A Schönhuth, N Beerenwinkel
PLoS computational biology 10 (3), e1003515, 2014
962014
Improved imputation quality of low-frequency and rare variants in European samples using the ‘Genome of The Netherlands’
P Deelen, A Menelaou, EM Van Leeuwen, A Kanterakis, F Van Dijk, ...
European Journal of Human Genetics 22 (11), 1321-1326, 2014
952014
A high-quality human reference panel reveals the complexity and distribution of genomic structural variants
JY Hehir-Kwa, T Marschall, WP Kloosterman, LC Francioli, JA Baaijens, ...
Nature communications 7 (1), 1-10, 2016
722016
Efficient exact motif discovery
T Marschall, S Rahmann
Bioinformatics 25 (12), i356-i364, 2009
692009
Discovering motifs that induce sequencing errors
M Allhoff, A Schönhuth, M Martin, IG Costa, S Rahmann, T Marschall
BMC bioinformatics 14 (5), 1-10, 2013
672013
Population-specific genotype imputations using minimac or IMPUTE2
EM van Leeuwen, A Kanterakis, P Deelen, MV Kattenberg, ...
Nature Protocols 10 (9), 1285-1296, 2015
622015
WhatsHap: fast and accurate read-based phasing
M Martin, M Patterson, S Garg, S Fischer, N Pisanti, GW Klau, ...
BioRxiv, 085050, 2016
612016
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Articles 1–20