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Ilke Ugur
Ilke Ugur
Postdoc, Computational Chemistry, TUM
Verified email at tum.de
Title
Cited by
Cited by
Year
Role of chain transfer agents in free radical polymerization kinetics
T Furuncuoglu, I Ugur, I Degirmenci, V Aviyente
Macromolecules 43 (4), 1823-1835, 2010
2042010
Redox-coupled substrate water reorganization in the active site of Photosystem II—The role of calcium in substrate water delivery
I Ugur, AW Rutherford, VRI Kaila
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1857 (6), 740-748, 2016
1092016
The low spin-high spin equilibrium in the S2-state of the water oxidizing enzyme
A Boussac, I Ugur, A Marion, M Sugiura, VRI Kaila, AW Rutherford
Biochimica et Biophysica Acta (BBA)-Bioenergetics 1859 (5), 342-356, 2018
942018
Repurposing human kinase inhibitors to create an antibiotic active against drug-resistant Staphylococcus aureus, persisters and biofilms
P Le, E Kunold, R Macsics, K Rox, MC Jennings, I Ugur, M Reinecke, ...
Nature chemistry 12 (2), 145-158, 2020
842020
Rationalization of the pKa Values of Alcohols and Thiols Using Atomic Charge Descriptors and Its Application to the Prediction of Amino Acid pKa’s
I Ugur, A Marion, S Parant, JH Jensen, G Monard
Journal of chemical information and modeling 54 (8), 2200-2213, 2014
732014
Actin stabilizing compounds show specific biological effects due to their binding mode
S Wang, AH Crevenna, I Ugur, A Marion, I Antes, U Kazmaier, M Hoyer, ...
Scientific reports 9 (1), 9731, 2019
372019
Cyclopolymerization reactions of diallyl monomers: exploring electronic and steric effects using DFT reactivity indices
I Ugur, F De Vleeschouwer, N Tuzun, V Aviyente, P Geerlings, S Liu, ...
The Journal of Physical Chemistry A 113 (30), 8704-8711, 2009
332009
Natural‐Product‐Inspired Aminoepoxybenzoquinones Kill Members of the Gram‐Negative Pathogen Salmonella by Attenuating Cellular Stress Response
FA Mandl, VC Kirsch, I Ugur, E Kunold, J Vomacka, C Fetzer, S Schneider, ...
Angewandte Chemie International Edition 55 (47), 14852-14857, 2016
182016
Predicting the bioactive conformations of macrocycles: a molecular dynamics-based docking procedure with DynaDock
I Ugur, M Schroft, A Marion, M Glaser, I Antes
Journal of Molecular Modeling 25, 1-13, 2019
172019
Why does Asn71 deamidate faster than Asn15 in the enzyme triosephosphate isomerase? Answers from microsecond molecular dynamics simulation and QM/MM free energy calculations
I Ugur, A Marion, V Aviyente, G Monard
Biochemistry 54 (6), 1429-1439, 2015
162015
Ca2+ binding induced sequential allosteric activation of sortase A: An example for ion-triggered conformational selection
I Ugur, M Schatte, A Marion, M Glaser, M Boenitz-Dulat, I Antes
PLoS One 13 (10), e0205057, 2018
122018
Activity of Topotecan toward the DNA/Topoisomerase I Complex: a theoretical rationalization
SK Bali, A Marion, I Ugur, AK Dikmenli, S Catak, V Aviyente
Biochemistry 57 (9), 1542-1551, 2018
122018
Cyclization tendencies in the free radical polymerization of allyl acrylate derivatives: A computational study
Ö Karahan, M Işi̇k, G Çifci, İ Uǧur, D Avci, VI AvIyente
Journal of Polymer Science Part A: Polymer Chemistry 49 (11), 2474-2483, 2011
102011
First RAFT polymerization of captodative 2-acetamidoacrylic acid (AAA) monomer: An experimental and theoretical study
B Dedeoğlu, İ Uğur, İ Değirmenci, V Aviyente, B Barçın, G Çaylı, HY Acar
Polymer 54 (19), 5122-5132, 2013
82013
1,3-Dipolar Cycloaddition Reactions of Low-Valent Rhodium and Iridium Complexes with Arylnitrile N-Oxides
I Ugur, S Agopcan Cinar, B Dedeoglu, V Aviyente, MF Hawthorne, P Liu, ...
The Journal of organic chemistry 82 (10), 5096-5101, 2017
72017
Initiation of the reaction of deamidation in triosephosphate isomerase: investigations by means of molecular dynamics simulations
I Ugur, V Aviyente, G Monard
The Journal of Physical Chemistry B 116 (22), 6288-6301, 2012
62012
Exploring the catalytic cascade of cembranoid biosynthesis by combination of genetic engineering and molecular simulations
P Schrepfer, I Ugur, S Klumpe, B Loll, VRI Kaila, T Brück
Computational and Structural Biotechnology Journal 18, 1819-1829, 2020
42020
Proton relay network in P450cam formed upon docking of putidaredoxin
I Ugur, P Chandrasekhar
Proteins: Structure, Function, and Bioinformatics 88 (4), 558-572, 2020
32020
Role of the n+ 1 amino acid residue on the deamidation of asparagine in pentapeptides
HH Ince, FAS Konuklar, I Ugur, ÖA Ozcan, M Sayadi, M Feig, V Aviyente
Molecular Physics 113 (23), 3839-3848, 2015
22015
Naturstoffbasierte Aminoepoxybenzochinone inhibieren das Wachstum verschiedener Serovare des Gram‐negativen Krankheitserregers Salmonella durch Abschwächen der bakteriellen …
FA Mandl, VC Kirsch, I Ugur, E Kunold, J Vomacka, C Fetzer, S Schneider, ...
Angewandte Chemie 128 (47), 15074-15079, 2016
12016
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