Rui Liu
Rui Liu
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PennCNV: an integrated hidden Markov model designed for high-resolution copy number variation detection in whole-genome SNP genotyping data
K Wang, M Li, D Hadley, R Liu, J Glessner, SFA Grant, H Hakonarson, ...
Genome research 17 (11), 1665-1674, 2007
Neuronal subtypes and diversity revealed by single-nucleus RNA sequencing of the human brain
BB Lake, R Ai, GE Kaeser, NS Salathia, YC Yung, R Liu, A Wildberg, ...
Science 352 (6293), 1586-1590, 2016
Characterizing transcriptional heterogeneity through pathway and gene set overdispersion analysis
J Fan, N Salathia, R Liu, GE Kaeser, YC Yung, JL Herman, F Kaper, ...
Nature methods 13 (3), 241-244, 2016
Tet1 controls meiosis by regulating meiotic gene expression
S Yamaguchi, K Hong, R Liu, L Shen, A Inoue, D Diep, K Zhang, Y Zhang
Nature 492 (7429), 443-447, 2012
Dynamics of 5-methylcytosine and 5-hydroxymethylcytosine during germ cell reprogramming
S Yamaguchi, K Hong, R Liu, A Inoue, L Shen, K Zhang, Y Zhang
Cell research 23 (3), 329-339, 2013
The lncRNA DEANR1 facilitates human endoderm differentiation by activating FOXA2 expression
W Jiang, Y Liu, R Liu, K Zhang, Y Zhang
Cell reports 11 (1), 137-148, 2015
Epigenetic drift of H3K27me3 in aging links glycolysis to healthy longevity in Drosophila
Z Ma, H Wang, Y Cai, H Wang, K Niu, X Wu, H Ma, Y Yang, W Tong, F Liu, ...
Elife 7, e35368, 2018
Assessing characteristics of RNA amplification methods for single cell RNA sequencing
HR Dueck, R Ai, A Camarena, B Ding, R Dominguez, OV Evgrafov, ...
BMC genomics 17 (1), 1-22, 2016
On the design of clone-based haplotyping
ZK Lo C, Liu R, Lee J, Robasky K, Byrne S, Aach J, Church G, Bafna V
Genome Biology, 2013
Motifs and cis-regulatory modules mediating the expression of genes co-expressed in presynaptic neurons
R Liu, S Hannenhalli, M Bucan
Genome biology 10 (7), 1-18, 2009
Non-invasive early detection of cancer four years before conventional diagnosis using a blood test
X Chen, J Gole, A Gore, Q He, M Lu, J Min, Z Yuan, X Yang, Y Jiang, ...
Nature communications 11 (1), 1-10, 2020
Performance validation of an amplicon-based targeted next-generation sequencing assay and mutation profiling of 648 Chinese colorectal cancer patients
Y Wang, H Liu, Y Hou, X Zhou, L Liang, Z Zhang, H Shi, S Xu, P Hu, ...
Virchows Archiv 472 (6), 959-968, 2018
Delivering noninvasive prenatal testing in a clinical setting using semiconductor sequencing platform
Y Gao, B Xie, R Liu
Science China. Life Sciences 57 (7), 737, 2014
Applying pharmacogenomics in therapeutics
X Feng, HG Xie
CRC Press, 2016
Quantitative ChIP-seq by adding Spike-in from another species
K Niu, R Liu, N Liu
Bio-protocol 8 (16), e2981-e2981, 2018
5mC and 5hmC dynamics during PGC reprogramming and role of Tet1 in female meiosis
S Yamaguchi, K Hong, R Liu, L Shen, A Inoue, D Diep, K Zhang, Y Zhang
Epigenetics & Chromatin 6 (1), 1-1, 2013
Fecal multidimensional assay for non-invasive detection of colorectal cancer: fecal immunochemical test, stool DNA mutation, methylation and intestinal bacteria analysis
S Mo, H Wang, L Han, W Xiang, W Dai, P Zhao, F Pei, Z Su, C Ma, Q Li, ...
Frontiers in Oncology 11, 183, 2021
Compositions and methods for library construction and sequence analysis
JA Gole, A Gore, R Liu
US Patent App. 16/605,203, 2020
Compositions and methods for detection of genomic variance and DNA methylation status
R Liu
US Patent App. 16/605,201, 2020
Trantrace: a reliable, traceable, and collaborative solution to streamline the translation of emerging biomedical resources
M Su, Z Wang, M Li, W Ye, P Chen, M Huang, Z He, C Xia, J Cui, R Liu, ...
BioRxiv, 2020
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