Doxorubicin induces an extensive transcriptional and metabolic rewiring in yeast cells H Taymaz-Nikerel, ME Karabekmez, S Eraslan, B Kirdar Scientific Reports 8 (13672), 2018 | 147 | 2018 |
A novel strategy for selection and validation of reference genes in dynamic multidimensional experimental design in yeast A Cankorur-Cetinkaya, E Dereli, S Eraslan, E Karabekmez, D Dikicioglu, ... PloS one 7 (6), e38351, 2012 | 67 | 2012 |
How yeast re-programmes its transcriptional profile in response to different nutrient impulses D Dikicioglu, E Karabekmez, B Rash, P Pir, B Kirdar, SG Oliver BMC systems biology 5, 1-16, 2011 | 51 | 2011 |
The applications of multiple route optimization heuristics and meta-heuristic algorithms to solid waste transportation: A case study in Turkey U Dereci, ME Karabekmez Decision Analytics Journal 4, 2022 | 25 | 2022 |
A novel topological centrality measure capturing biologically important proteins ME Karabekmez, B Kirdar Molecular BioSystems 12 (2), 666-673, 2016 | 15 | 2016 |
Time-dependent re-organization of biological processes by the analysis of the dynamic transcriptional response of yeast cells to doxorubicin ME Karabekmez, H Taymaz-Nikerel, S Eraslan, B Kirdar Molecular Omics 17 (4), 572-582, 2021 | 6 | 2021 |
Data ethics in digital health and genomics ME Karabekmez The New Bioethics 27 (4), 320-333, 2021 | 5 | 2021 |
fE-Flux: Feasible Flux Boundary Modification Framework for Constraint Based Metabolic Models ME Karabekmez pro- 308 ceedings of ICEANS2023, AS-Proceedings 1 (4), 444-446, 2023 | 1 | 2023 |
Yaşam Bilimlerinde Veri-Yoğun Çağ: Yeni Nesil Dizileme ME Karabekmez Sağlık Alanında Büyük Veri, 11-24, 2020 | 1 | 2020 |
A modified Soft-thresholding Approach in the Transcriptomic Analysis of Adaptation of E. coli to Alternating Substrate Conditions ME Karabekmez Hittite Journal of Science and Engineering 6 (4), 315-318, 2019 | 1 | 2019 |
Parameterization of asymmetric sigmoid functions in weighted gene co-expression network analysis ME Karabekmez, M Yarıcı Computational Biology and Chemistry 108, 107998, 2024 | | 2024 |
Insights into Yeast Response to Chemotherapeutic Agent through Time Series Genome-Scale Metabolic Models ME Karabekmez bioRxiv, 2024.01. 02.573982, 2024 | | 2024 |
Drug-Drug Interaction, Interaction Type and Resulting Severity Forecasting by Machine Learning-Based Approaches ME Karabekmez, AS Aydıner, A Şener International Conference on IoT and Health, 1-11, 2023 | | 2023 |
Covid19 salgınında veri bilimini yeniden düşünmek ME Karabekmez Salgın Günlerinde Toplumu ve Siyaseti Yeniden Düşünmek, 107-122, 2020 | | 2020 |
Integrated Multi-organism Genome Scale Metabolic Modeling of Microbial Community of P.aeruginosa and M.barkeri ME Karabekmez Euroasian Congress on Molecular Biotechnology, 163-171, 2019 | | 2019 |
Lumping Protein Complexes to Reduce the Complexity of Human Protein-Protein Interaction Network ME Karabekmez Anatolian Clinic the Journal of Medical Sciences 24 (3), 231 - 236, 2019 | | 2019 |
Yaşam Bilimlerinde Yeni Paradigma ME Karabekmez Hayat Sağlık, 12-15, 2018 | | 2018 |
Integrative genome-wide analysis of long-term effects of doxorubicin on yeast cells H Taymaz-Nikerel, E Karabekmez, S Eraslan, B Kirdar New Biotechnology 44, S113, 2018 | | 2018 |
An integrative approach to analyze dynamic transcriptional response of yeast cells to DNA damage ME Karabekmez The FEBS Journal 283 (Suppl. 1), 14-15, 2016 | | 2016 |
The Age of Knowledge: The Dynamic of Universities, Knowledge and Society [Book Review] ME Karabekmez, M Karabekmez The Journal of Human & Society 4 (9), 144-146, 2015 | | 2015 |