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Matthew N McCall
Matthew N McCall
Associate Professor, University of Rochester Medical Center
Verified email at urmc.rochester.edu - Homepage
Title
Cited by
Cited by
Year
The MicroArray Quality Control (MAQC)-II study of common practices for the development and validation of microarray-based predictive models
MAQC Consortium
Nature biotechnology 28 (8), 827-838, 2010
8922010
Frozen robust multiarray analysis (fRMA)
MN McCall, BM Bolstad, RA Irizarry
Biostatistics 11 (2), 242-253, 2010
6612010
The Gene Expression Barcode: leveraging public data repositories to begin cataloging the human and murine transcriptomes
MN McCall, K Uppal, HA Jaffee, MJ Zilliox, RA Irizarry
Nucleic acids research 39 (suppl 1), D1011-D1015, 2011
2162011
Lessons from miR-143/145: the importance of cell-type localization of miRNAs
OA Kent, MN McCall, TC Cornish, MK Halushka
Nucleic acids research 42 (12), 7528-7538, 2014
2082014
On non-detects in qPCR data
MN McCall, HR McMurray, H Land, A Almudevar
Bioinformatics 30 (16), 2310-2316, 2014
1832014
A critical evaluation of microRNA biomarkers in non-neoplastic disease
BA Haider, AS Baras, MN McCall, JA Hertel, TC Cornish, MK Halushka
PloS one 9 (2), e89565, 2014
1762014
Toward the human cellular microRNAome
MN McCall, MS Kim, M Adil, AH Patil, Y Lu, CJ Mitchell, P Leal-Rojas, ...
Genome Research 27 (10), 1769-1781, 2017
1502017
MicroRNA profiling of diverse endothelial cell types
MN McCall, OA Kent, J Yu, K Fox-Talbot, AL Zaiman, MK Halushka
BMC medical genomics 4, 1-13, 2011
1282011
Using transcriptomics to guide lead optimization in drug discovery projects: Lessons learned from the QSTAR project
B Verbist, G Klambauer, L Vervoort, W Talloen, Z Shkedy, O Thas, ...
Drug discovery today 20 (5), 505-513, 2015
1072015
Cardioprotection by the mitochondrial unfolded protein response requires ATF5
YT Wang, Y Lim, MN McCall, KT Huang, CM Haynes, K Nehrke, ...
American Journal of Physiology-Heart and Circulatory Physiology 317 (2 …, 2019
992019
Assessing affymetrix GeneChip microarray quality
MN McCall, PN Murakami, M Lukk, W Huber, RA Irizarry
BMC bioinformatics 12 (1), 137, 2011
972011
Kras and Tp53 mutations cause cholangiocyte-and hepatocyte-derived cholangiocarcinoma
MA Hill, WB Alexander, B Guo, Y Kato, K Patra, MR O'Dell, MN McCall, ...
Cancer research 78 (16), 4445-4451, 2018
902018
The Gene Expression Barcode 3.0: improved data processing and mining tools
MN McCall, HA Jaffee, SJ Zelisko, N Sinha, G Hooiveld, RA Irizarry, ...
Nucleic acids research 42 (D1), D938-D943, 2014
882014
Complex Sources of Variation in Tissue Expression Data: Analysis of the GTEx Lung Transcriptome
MN McCall, PB Illei, MK Halushka
The American Journal of Human Genetics 99 (3), 624-635, 2016
692016
Micro RNA expression profiles as adjunctive data to assess the risk of hepatocellular carcinoma recurrence after liver transplantation
CT Barry, M D'Souza, M McCall, S Safadjou, C Ryan, R Kashyap, ...
American Journal of Transplantation 12 (2), 428-437, 2012
622012
Gene expression anti-profiles as a basis for accurate universal cancer signatures
HC Bravo, V Pihur, M McCall, R Irizarry, J Leek
BMC bioinformatics 13 (1), 272, 2012
532012
Thawing frozen robust multi-array analysis (fRMA)
MN McCall, RA Irizarry
BMC bioinformatics 12 (1), 369, 2011
522011
Systematic exploration of cell morphological phenotypes associated with a transcriptomic query
I Nassiri, MN McCall
Nucleic acids research 46 (19), e116-e116, 2018
502018
fRMA ST: frozen robust multiarray analysis for Affymetrix Exon and Gene ST arrays
MN McCall, HA Jaffee, RA Irizarry
Bioinformatics 28 (23), 3153-3154, 2012
492012
Consistent RNA sequencing contamination in GTEx and other data sets
TO Nieuwenhuis, SY Yang, RX Verma, V Pillalamarri, DE Arking, ...
Nature communications 11 (1), 1933, 2020
482020
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