Amina Shabbeer
Title
Cited by
Cited by
Year
TB-Lineage: an online tool for classification and analysis of strains of Mycobacterium tuberculosis complex
A Shabbeer, LS Cowan, C Ozcaglar, N Rastogi, SL Vandenberg, B Yener, ...
Infection, Genetics and Evolution 12 (4), 789-797, 2012
972012
Epidemiological models of Mycobacterium tuberculosis complex infections
C Ozcaglar, A Shabbeer, SL Vandenberg, B Yener, KP Bennett
Mathematical Biosciences 236 (2), 77-96, 2012
952012
Web tools for molecular epidemiology of tuberculosis
A Shabbeer, C Ozcaglar, B Yener, KP Bennett
Infection, Genetics and Evolution 12 (4), 767-781, 2012
472012
Online knowledge-based support vector machines
G Kunapuli, KP Bennett, A Shabbeer, R Maclin, J Shavlik
Joint European Conference on Machine Learning and Knowledge Discovery in …, 2010
342010
A conformal Bayesian network for classification of Mycobacterium tuberculosis complex lineages
M Aminian, A Shabbeer, KP Bennett
Bmc Bioinformatics 11 (3), 1-14, 2010
302010
Sublineage structure analysis of Mycobacterium tuberculosis complex strains using multiple-biomarker tensors
C Ozcaglar, A Shabbeer, S Vandenberg, B Yener, KP Bennett
BMC genomics 12 (2), 1-26, 2011
202011
Predicting Mycobacterium tuberculosis complex clades using knowledge-based Bayesian networks
M Aminian, D Couvin, A Shabbeer, K Hadley, S Vandenberg, N Rastogi, ...
BioMed research international 2014, 2014
112014
Determination of major lineages of Mycobacterium tuberculosis Complex using mycobacterial interspersed repetitive units
M Aminian, A Shabbeer, KP Bennett
2009 IEEE International Conference on Bioinformatics and Biomedicine, 338-343, 2009
112009
Knowledge-based Bayesian network for the classification of Mycobacterium tuberculosis complex sublineages
M Aminian, A Shabbeer, K Hadley, C Ozcaglar, S Vandenberg, ...
Proceedings of the 2nd ACM Conference on Bioinformatics, Computational …, 2011
52011
Inferred spoligoforest topology unravels spatially bimodal distribution of mutations in the DR region
C Ozcaglar, A Shabbeer, N Kurepina, N Rastogi, B Yener, KP Bennett
IEEE transactions on nanobioscience 11 (3), 191-202, 2012
42012
Optimal embedding of heterogeneous graph data with edge crossing constraints
A Shabbeer, C Ozcaglar, M Gonzalez, KP Bennett
Presented at NIPS Workshop on Challenges of Data Visualization, 1, 2010
42010
Visualization of tuberculosis patient and Mycobacterium tuberculosis complex genotype data via host-pathogen maps
KP Bennett, C Ozcaglar, J Ranganathan, S Raghavan, J Katz, D Croft, ...
2011 IEEE International Conference on Bioinformatics and Biomedicine …, 2011
32011
A clustering framework for Mycobacterium tuberculosis complex strains using multiple-biomarker tensors
C Ozcaglar, A Shabbeer, S Vandenberg, B Yener, KP Bennett
Department of Computer Science, Rensselaer Polytechnic Institute, Tech. Rep …, 2010
32010
Crossing Minimization within Graph Embeddings
A Shabbeer, C Ozcaglar, KP Bennett
arXiv preprint arXiv:1210.2041, 2012
22012
Data-driven insights into deletions of Mycobacterium tuberculosis complex chromosomal DR Region using spoligoforests
C Ozcaglar, A Shabbeer, N Kurepina, B Yener, KP Bennett
2011 IEEE International Conference on Bioinformatics and Biomedicine, 75-82, 2011
22011
Examining the sublineage structure of Mycobacterium tuberculosis complex strains with multiple-biomarker tensors
C Ozcaglar, A Shabbeer, S Vandenberg, KP Bennett
2010 IEEE International Conference on Bioinformatics and Biomedicine (BIBM …, 2010
22010
Nonconvex nonsmooth optimization for bioinformatics
A Shabbeer
Rensselaer Polytechnic Institute, 2013
2013
TB-vis: Visualizing TB patient-pathogen relationships
KP Bennett, C Ozcaglar, J Ranganathan, S Raghavan, J Katz, D Croft, ...
TUBERCULOSIS 93 (1), 112-113, 2013
2013
Preserving proximity relations and minimizing edge-crossings in high dimensional graph visualizations
A Shabbeer, C Ozcaglar, B Yener, KP Bennett
2011 IEEE Symposium on Large Data Analysis and Visualization, 131-132, 2011
2011
Proximity Preservation and Crossing-Minimization for Graph Embedding
A Shabbeer, KP Bennett
The system can't perform the operation now. Try again later.
Articles 1–20