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Ali Rana Atilgan
Ali Rana Atilgan
Professor at Sabanci University and Adjunct Professor at Bogazici University, Istanbul, Turkey
Verified email at sabanciuniv.edu - Homepage
Title
Cited by
Cited by
Year
Anisotropy of fluctuation dynamics of proteins with an elastic network model
AR Atilgan, SR Durell, RL Jernigan, MC Demirel, O Keskin, I Bahar
Biophysical journal 80 (1), 505-515, 2001
17792001
Direct evaluation of thermal fluctuations in proteins using a single-parameter harmonic potential
I Bahar, AR Atilgan, B Erman
Folding and Design 2 (3), 173-181, 1997
15731997
Vibrational dynamics of folded proteins: significance of slow and fast motions in relation to function and stability
I Bahar, AR Atilgan, MC Demirel, B Erman
Physical review letters 80 (12), 2733, 1998
4931998
Small-world communication of residues and significance for protein dynamics
AR Atilgan, P Akan, C Baysal
Biophysical journal 86 (1), 85-91, 2004
3842004
Dynamics of proteins predicted by molecular dynamics simulations and analytical approaches: Application to α‐amylase inhibitor
P Doruker, AR Atilgan, I Bahar
Proteins: Structure, Function, and Bioinformatics 40 (3), 512-524, 2000
3752000
Collective motions in HIV-1 reverse transcriptase: examination of flexibility and enzyme function
I Bahar, B Erman, RL Jernigan, AR Atilgan, DG Covell
Journal of molecular biology 285 (3), 1023-1037, 1999
2761999
Perturbation-response scanning reveals ligand entry-exit mechanisms of ferric binding protein
C Atilgan, AR Atilgan
PLoS computational biology 5 (10), e1000544, 2009
2242009
Nonclassical behavior of thin‐walled composite beams with closed cross sections
LW Rehfield, AR Atilgan, DH Hodges
Journal of the American Helicopter Society 35 (2), 42-50, 1990
2051990
On a simplified strain energy function for geometrically nonlinear behaviour of anisotropic beams
DH Hodges, AR Atilgan, CES Cesnik, MV Fulton
Composites Engineering 2 (5-7), 513-526, 1992
1781992
Free‐Vibration analysis of composite beams
DH Hodges, AR Atilgan, MV Fulton, LW Rehfield
Journal of the American Helicopter Society 36 (3), 36-47, 1991
1681991
Understanding the recognition of protein structural classes by amino acid composition
I Bahar, AR Atilgan, RL Jernigan, B Erman
Proteins: Structure, Function, and Bioinformatics 29 (2), 172-185, 1997
1601997
Manipulation of conformational change in proteins by single-residue perturbations
C Atilgan, ZN Gerek, SB Ozkan, AR Atilgan
Biophysical journal 99 (3), 933-943, 2010
1542010
Identification of kinetically hot residues in proteins
MC Demirel, AR Atilgan, I Bahar, RL Jernigan, B Erman
Protein Science 7 (12), 2522-2532, 1998
1541998
MD-TASK: a software suite for analyzing molecular dynamics trajectories
DK Brown, DL Penkler, O Sheik Amamuddy, C Ross, AR Atilgan, ...
Bioinformatics 33 (17), 2768-2771, 2017
1422017
A geometrically nonlinear theory of elastic plates
DH Hodges, AR Atilgan, DA Danielson
1021993
Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication
AR Atilgan, D Turgut, C Atilgan
Biophysical journal 92 (9), 3052-3062, 2007
802007
Unified nonlinear analysis for nonhomogeneous anisotropic beams withclosed cross sections
AR Atilgan, DH Hodges
AIAA journal 29 (11), 1990-1999, 1991
751991
High-order epistasis in catalytic power of dihydrofolate reductase gives rise to a rugged fitness landscape in the presence of trimethoprim selection
YT Tamer, IK Gaszek, H Abdizadeh, TA Batur, KA Reynolds, AR Atilgan, ...
Molecular biology and evolution 36 (7), 1533-1550, 2019
602019
Toward understanding the tailoring mechanisms for thin-walled composite tubular beams
LW Rehfield, AR Atilgan, SW Tsai, JM Whitney
Proceedings of the First USSR-US Symposium on Mechanics of Composite …, 1989
601989
Network-based models as tools hinting at nonevident protein functionality
C Atilgan, OB Okan, AR Atilgan
Annual review of biophysics 41, 205-225, 2012
552012
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