Todd R. Riley
Todd R. Riley
Assistant Professor, UMass Boston
Verified email at umb.edu - Homepage
Title
Cited by
Cited by
Year
Transcriptional control of human p53-regulated genes
T Riley, E Sontag, P Chen, A Levine
Nature reviews Molecular cell biology 9 (5), 402-412, 2008
20592008
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ...
Cell 147 (6), 1270-1282, 2011
4342011
Evaluation of methods for modeling transcription factor sequence specificity
MT Weirauch, A Cote, R Norel, M Annala, Y Zhao, TR Riley, ...
Nature biotechnology 31 (2), 126-134, 2013
3232013
Probing DNA shape and methylation state on a genomic scale with DNase I
A Lazarovici, T Zhou, A Shafer, ACD Machado, TR Riley, R Sandstrom, ...
Proceedings of the National Academy of Sciences 110 (16), 6376-6381, 2013
1702013
TLS/FUS (translocated in liposarcoma/fused in sarcoma) regulates target gene transcription via single-stranded DNA response elements
AY Tan, TR Riley, T Coady, HJ Bussemaker, JL Manley
Proceedings of the National Academy of Sciences 109 (16), 6030-6035, 2012
1192012
The regulation of the endosomal compartment by p53 the tumor suppressor gene
X Yu, T Riley, AJ Levine
The FEBS journal 276 (8), 2201-2212, 2009
1182009
SELEX-seq: a method for characterizing the complete repertoire of binding site preferences for transcription factor complexes
TR Riley, M Slattery, N Abe, C Rastogi, D Liu, RS Mann, HJ Bussemaker
Hox Genes, 255-278, 2014
692014
Building accurate sequence-to-affinity models from high-throughput in vitro protein-DNA binding data using FeatureREDUCE
TR Riley, A Lazarovici, RS Mann, HJ Bussemaker
Elife 4, e06397, 2015
342015
The p53HMM algorithm: using profile hidden markov models to detect p53-responsive genes
T Riley, X Yu, E Sontag, A Levine
BMC bioinformatics 10 (1), 1-13, 2009
142009
ModEx: A text mining system for extracting mode of regulation of transcription factor-gene regulatory interaction
S Farahmand, T Riley, K Zarringhalam
Journal of biomedical informatics 102, 103353, 2020
72020
Nonalcoholic fatty liver disease demonstrates a pre-fibrotic and premalignant molecular signature
D Almanza, M Gharaee-Kermani, A Zhilin-Roth, JA Rodriguez-Nieves, ...
Digestive diseases and sciences 64 (5), 1257-1269, 2019
72019
CXCL12/CXCR4-Mediated procollagen secretion is coupled to cullin-RING ubiquitin ligase activation
S Patalano, J Rodríguez-Nieves, C Colaneri, J Cotellessa, D Almanza, ...
Scientific reports 8 (1), 1-11, 2018
62018
MP17-09 CXCL12-CXCR4 AXIS ACTIVATION PROMOTES COP II VESICLE-MEDIATED SECRETION OF COLLAGEN BY PROSTATE MYOFIBROBLASTS
S Patalano-Salsman, JA Rodriguez-Nieves, D Almanza, A Avery, ...
The Journal of Urology 197 (4S), e214-e215, 2017
2017
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