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Caner Bağcı
Caner Bağcı
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Alıntı yapanlar
Alıntı yapanlar
Yıl
MEGAN-LR: new algorithms allow accurate binning and easy interactive exploration of metagenomic long reads and contigs
DH Huson, B Albrecht, C Bağcı, I Bessarab, A Gorska, D Jolic, ...
Biology direct 13, 1-17, 2018
1792018
DIAMOND+ MEGAN: fast and easy taxonomic and functional analysis of short and long microbiome sequences
C Bağcı, S Patz, DH Huson
Current protocols 1 (3), e59, 2021
962021
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data
K Arumugam, C Bağcı, I Bessarab, S Beier, B Buchfink, A Górska, G Qiu, ...
Microbiome 7, 1-13, 2019
762019
The Isolate Caproiciproducens sp. 7D4C2 Produces n-Caproate at Mildly Acidic Conditions From Hexoses: Genome and rBOX Comparison With Related Strains …
S Esquivel-Elizondo, C Bağcı, M Temovska, BS Jeon, I Bessarab, ...
Frontiers in microbiology 11, 594524, 2021
702021
Computational Prediction of MicroRNAs from Toxoplasma Gondii Potentially Regulating the Hosts’ Gene Expression
MD Saçar, C Bağcı, J Allmer
Genomics, Proteomics and Bioinformatics 12 (5), 228-238, 2014
502014
Introduction to the analysis of environmental sequences: metagenomics with MEGAN
C Bağcı, S Beier, A Górska, DH Huson
Evolutionary genomics: statistical and computational methods, 591-604, 2019
372019
One step forward, two steps back; xeno-microRNAs reported in breast milk are artifacts
C Bağcı, J Allmer
PloS one 11 (1), e0145065, 2016
342016
Using AnnoTree to get more assignments, faster, in DIAMOND+ MEGAN microbiome analysis
A Gautam, H Felderhoff, C Bağci, DH Huson
Msystems 7 (1), e01408-21, 2022
292022
Differential Expression of Toxoplasma gondii MicroRNAs in Murine and Human Hosts
MD Saçar Demirci, C Bağcı, J Allmer
Non-coding RNAs and inter-kingdom communication, 143-159, 2016
132016
MAIRA-real-time taxonomic and functional analysis of long reads on a laptop
B Albrecht, C Bağcı, DH Huson
BMC bioinformatics 21, 1-12, 2020
92020
Microbial phylogenetic context using phylogenetic outlines
C Bagci, D Bryant, B Cetinkaya, DH Huson
Genome biology and evolution 13 (9), evab213, 2021
82021
Annotated bacterial chromosomes from frame-shift-corrected long-read metagenomic data. Microbiome 7, 61
K Arumugam, C Bağcı, I Bessarab, S Beier, B Buchfink, A Górska, G Qiu, ...
52019
BGC Atlas: a web resource for exploring the global chemical diversity encoded in bacterial genomes
C Bağcı, M Nuhamunada, H Goyat, C Ladanyi, L Sehnal, K Blin, ...
Nucleic Acids Research, gkae953, 2024
42024
One Step Forward, Two Steps Back; Xeno-MicroRNAs Reported in Breast Milk Are Artifacts.. 2016;(1): e0145065|
C Bağcı, J Allmer
PLoS One 11, 0
4
Removing contamination from genomic sequences based on vector reference libraries
C Bagci, J Allmer
2012 7th international symposium on health informatics and bioinformatics …, 2012
22012
Strong pairwise interactions do not drive interactions in a plant leaf associated microbial community
F Höhn, V Chaudhry, C Bagci, M Mahmoudi, E Klenk3, L Berg, P Stincone, ...
ISME Communications, ycae117, 2024
2024
MAIRA: Protein-based Analysis of MinION Reads on a Laptop
C Bağcı, B Albrecht, DH Huson
Metagenomic Data Analysis, 223-234, 2023
2023
Analysis of Large-Scale Microbiome Sequencing Datasets on BinAC
S Patz, C Bağcı, M Balvočiūte, B Albrecht, BB Xavier, BS Jeon, ...
Book of Abstracts, 37, 2019
2019
Automatic, fast and accurate sequence decontamination
C Bağcı
PQDT-Global, 2016
2016
LAST+ MEGAN-LR Approach to the Oxford Nanopore Wiggle Space Challenge
C Bagci, B Albrecht, D Boceck, A Gorska, D Jolic, I Bessarab, R Williams, ...
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