Variation graph toolkit improves read mapping by representing genetic variation in the reference E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ... Nature biotechnology 36 (9), 875-879, 2018 | 310 | 2018 |
A robust benchmark for detection of germline large deletions and insertions JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ... Nature biotechnology 38 (11), 1347-1355, 2020 | 167* | 2020 |
WhatsHap: fast and accurate read-based phasing M Martin, M Patterson, S Garg, SO Fischer, N Pisanti, GW Klau, ... BioRxiv, 085050, 2016 | 113* | 2016 |
Chromosome-scale, haplotype-resolved assembly of human genomes S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ... Nature biotechnology 39 (3), 309-312, 2021 | 70* | 2021 |
Dense and accurate whole-chromosome haplotyping of individual genomes D Porubsky, S Garg, AD Sanders, JO Korbel, V Guryev, PM Lansdorp, ... Nature communications 8 (1), 1-10, 2017 | 66 | 2017 |
Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139-162, 2020 | 50 | 2020 |
A graph-based approach to diploid genome assembly S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall Bioinformatics 34 (13), i105-i114, 2018 | 47 | 2018 |
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking CJ Smith, O Castanon, K Said, V Volf, P Khoshakhlagh, A Hornick, ... Nucleic acids research 48 (9), 5183-5195, 2020 | 32* | 2020 |
A diploid assembly-based benchmark for variants in the major histocompatibility complex CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ... Nature communications 11 (1), 1-9, 2020 | 31 | 2020 |
Read-based phasing of related individuals S Garg, M Martin, T Marschall Bioinformatics 32 (12), i234-i242, 2016 | 31 | 2016 |
VividhaVahana: smartphone based vehicle classification and its applications in developing region S Garg, P Singh, P Ramanathan, R Sen Proceedings of the 11th International Conference on Mobile and Ubiquitous …, 2014 | 24 | 2014 |
Computational methods for chromosome-scale haplotype reconstruction S Garg Genome biology 22 (1), 1-24, 2021 | 20 | 2021 |
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph S Garg, J Aach, H Li, I Sebenius, R Durbin, G Church Bioinformatics 36 (8), 2385-2392, 2020 | 16 | 2020 |
O Fischer M Martin, M Patterson, S Garg bioRxiv, 2016 | 12 | 2016 |
The era of reference genomes in conservation genomics G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ... Trends in Ecology & Evolution, 2022 | 10 | 2022 |
A strategy for building and using a human reference pangenome B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ... F1000Research 8, 2019 | 9 | 2019 |
SDip: a novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing D Heller, M Vingron, G Church, H Li, S Garg bioRxiv, 2020 | 8 | 2020 |
Automated assembly of high-quality diploid human reference genomes ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ... bioRxiv, 2022 | 3 | 2022 |
Computational haplotyping: theory and practice S Garg Saarländische Universitäts-und Landesbibliothek, 2018 | 3 | 2018 |
A qptas for gapless mec S Garg, T Mömke arXiv preprint arXiv:1804.10930, 2018 | 2 | 2018 |