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Shilpa Garg
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Variation graph toolkit improves read mapping by representing genetic variation in the reference
E Garrison, J Sirén, AM Novak, G Hickey, JM Eizenga, ET Dawson, ...
Nature biotechnology 36 (9), 875-879, 2018
3102018
A robust benchmark for detection of germline large deletions and insertions
JM Zook, NF Hansen, ND Olson, L Chapman, JC Mullikin, C Xiao, ...
Nature biotechnology 38 (11), 1347-1355, 2020
167*2020
WhatsHap: fast and accurate read-based phasing
M Martin, M Patterson, S Garg, SO Fischer, N Pisanti, GW Klau, ...
BioRxiv, 085050, 2016
113*2016
Chromosome-scale, haplotype-resolved assembly of human genomes
S Garg, A Fungtammasan, A Carroll, M Chou, A Schmitt, X Zhou, S Mac, ...
Nature biotechnology 39 (3), 309-312, 2021
70*2021
Dense and accurate whole-chromosome haplotyping of individual genomes
D Porubsky, S Garg, AD Sanders, JO Korbel, V Guryev, PM Lansdorp, ...
Nature communications 8 (1), 1-10, 2017
662017
Pangenome graphs
JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ...
Annual review of genomics and human genetics 21, 139-162, 2020
502020
A graph-based approach to diploid genome assembly
S Garg, M Rautiainen, AM Novak, E Garrison, R Durbin, T Marschall
Bioinformatics 34 (13), i105-i114, 2018
472018
Enabling large-scale genome editing at repetitive elements by reducing DNA nicking
CJ Smith, O Castanon, K Said, V Volf, P Khoshakhlagh, A Hornick, ...
Nucleic acids research 48 (9), 5183-5195, 2020
32*2020
A diploid assembly-based benchmark for variants in the major histocompatibility complex
CS Chin, J Wagner, Q Zeng, E Garrison, S Garg, A Fungtammasan, ...
Nature communications 11 (1), 1-9, 2020
312020
Read-based phasing of related individuals
S Garg, M Martin, T Marschall
Bioinformatics 32 (12), i234-i242, 2016
312016
VividhaVahana: smartphone based vehicle classification and its applications in developing region
S Garg, P Singh, P Ramanathan, R Sen
Proceedings of the 11th International Conference on Mobile and Ubiquitous …, 2014
242014
Computational methods for chromosome-scale haplotype reconstruction
S Garg
Genome biology 22 (1), 1-24, 2021
202021
A haplotype-aware de novo assembly of related individuals using pedigree sequence graph
S Garg, J Aach, H Li, I Sebenius, R Durbin, G Church
Bioinformatics 36 (8), 2385-2392, 2020
162020
O Fischer
M Martin, M Patterson, S Garg
bioRxiv, 2016
122016
The era of reference genomes in conservation genomics
G Formenti, K Theissinger, C Fernandes, I Bista, A Bombarely, C Bleidorn, ...
Trends in Ecology & Evolution, 2022
102022
A strategy for building and using a human reference pangenome
B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ...
F1000Research 8, 2019
92019
SDip: a novel graph-based approach to haplotype-aware assembly based structural variant calling in targeted segmental duplications sequencing
D Heller, M Vingron, G Church, H Li, S Garg
bioRxiv, 2020
82020
Automated assembly of high-quality diploid human reference genomes
ED Jarvis, G Formenti, A Rhie, A Guarracino, C Yang, J Wood, A Tracey, ...
bioRxiv, 2022
32022
Computational haplotyping: theory and practice
S Garg
Saarländische Universitäts-und Landesbibliothek, 2018
32018
A qptas for gapless mec
S Garg, T Mömke
arXiv preprint arXiv:1804.10930, 2018
22018
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Articles 1–20