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Deniz Turgut
Deniz Turgut
Seven Bridges Genomics
Verified email at sbgenomics.com - Homepage
Title
Cited by
Cited by
Year
PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions
ND Olson, J Wagner, J McDaniel, SH Stephens, ST Westreich, ...
Cell genomics 2 (5), 2022
1192022
Screened nonbonded interactions in native proteins manipulate optimal paths for robust residue communication
AR Atilgan, D Turgut, C Atilgan
Biophysical journal 92 (9), 3052-3062, 2007
802007
Assortative mixing in close-packed spatial networks
D Turgut, AR Atilgan, C Atilgan
PLoS One 5 (12), e15551, 2010
142010
Pan-African genome demonstrates how population-specific genome graphs improve high-throughput sequencing data analysis
HS Tetikol, D Turgut, K Narci, G Budak, O Kalay, E Arslan, ...
Nature Communications 13 (1), 4384, 2022
8*2022
Could network structures generated with simple rules imposed on a cubic lattice reproduce the structural descriptors of globular proteins?
O Burak Okan, D Turgut, C Atilgan, A Rana Atilgan, R Ozisik
Journal of Complex Networks 10 (1), cnab048, 2022
12022
Network characterization of packing architecture for condensed matter systems
D Turgut
12011
Automated Identification of Germline de novo Mutations in Family Trios: A Consensus-Based Informatic Approach
M Shadrina, Kalay, S Demirkaya-Budak, CA LeDuc, WK Chung, ...
bioRxiv, 2024
2024
Systems and methods for generating graph references
HS Tetikol, D Turgut
US Patent App. 17/697,301, 2022
2022
Conformational analysis of sulfated and unmodified levan polysaccharides via molecular dynamics simulations
ET Oner, B Coskunkan, D Turgut, D Rende, S Bucak, N Baysal, R Ozisik
New Biotechnology, S150-S151, 2016
2016
Sulfation effect on levan polysaccharide chains structure with molecular dynamics simulations
B Coskunkan, D Turgut, D Rende, S Malta, N Baysal, R Ozisik, ...
APS March Meeting Abstracts 2016, M1. 056, 2016
2016
Targeted conformational transitions of large and multimeric proteins by an efficient elastic network based technique
Y Yesiltepe, D Findik, A Uyar, D Turgut, R Ozisik, T Haliloglu, P Doruker
PROTEIN SCIENCE 24, 226-226, 2015
2015
Targeted Conformational Transitions of Multimeric Proteins by Monte Carlo Simulations Combined with Collective Anisotropic Network Model Modes
Y Yesiltepe, A Uyar, D Turgut, T Haliloglu, P Doruker, R Ozisik
Biophysical Journal 108 (2), 211a, 2015
2015
Investigation of protein fluctuations via Anisotropic Network Model and Molecular Dynamics
OB Okan, D Turgut, A Rammohan, AE Garcia, R Ozisik
APS March Meeting Abstracts 2014, L11. 007, 2014
2014
Generation of protein-like structures via simple rules imposed on a cubic lattice
R Ozisik, D Turgut, OB Okan, A Rammohan, AE Garcia
APS March Meeting Abstracts 2014, Y11. 003, 2014
2014
Investigation of the structure of levan polysaccharide chains in water via molecular dynamics simulations
D Turgut, B Coskunkan, G Cem, D Rende, KY Arga, S Bucak, N Baysal, ...
APS March Meeting Abstracts 2014, D19. 010, 2014
2014
Simple Rules Imposed on a Primitive Cubic Lattice Robustly Generate Structures that Mimic Features of Real Proteins
D Turgut, OB Okan, A Rammohan, AE Garcia, R Ozisik
Biophysical Journal 106 (2), 655a, 2014
2014
Predicting folding-unfolding transitions in proteins without a priori knowledge of the folded state
O Okan, D Turgut, A Garcia, R Ozisik
APS March Meeting Abstracts 2013, F45. 002, 2013
2013
Investigating the nature of folded protein structure with the aid of crystalline and amorphous models
D Turgut, O Okan, A Garcia, R Ozisik
APS March Meeting Abstracts 2013, Z46. 009, 2013
2013
Orchestrating Population Shifts of Native Proteins in Different Environments
AR Atilgan, D Turgut, AO Aykut, C Atilgan
Biophysical Journal 100 (3), 372a, 2011
2011
Three-dimensional lattice-based network models portray the properties of folded proteins
D Turgut, C Atilgan, AR Atilgan
Statistical Mechanics of Molecular Biophysics, 21, 2008
2008
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Articles 1–20