The ribosome profiling strategy for monitoring translation in vivo by deep sequencing of ribosome-protected mRNA fragments AMMGJSW Nicholas T Ingolia, Gloria A Brar, Silvia Rouskin Nature Protocols 7, 1534–1550, 2012 | 1267 | 2012 |
Genome-wide probing of RNA structure reveals active unfolding of mRNA structures in vivo S Rouskin, M Zubradt, S Washietl, M Kellis, JS Weissman Nature 505 (7485), 701-705, 2014 | 864 | 2014 |
A ribosome-bound quality control complex triggers degradation of nascent peptides and signals translation stress O Brandman, J Stewart-Ornstein, D Wong, A Larson, CC Williams, GW Li, ... Cell 151 (5), 1042-1054, 2012 | 643 | 2012 |
DMS-MaPseq for genome-wide or targeted RNA structure probing in vivo M Zubradt, P Gupta, S Persad, AM Lambowitz, JS Weissman, S Rouskin Nature methods 14 (1), 75-82, 2017 | 427 | 2017 |
Pan-viral screening of respiratory tract infections in adults with and without asthma reveals unexpected human coronavirus and human rhinovirus diversity A Kistler, PC Avila, S Rouskin, D Wang, T Ward, S Yagi, D Schnurr, ... Journal of Infectious Diseases 196 (6), 817-825, 2007 | 333 | 2007 |
Causal signals between codon bias, mRNA structure, and the efficiency of translation and elongation C Pop, S Rouskin, NT Ingolia, L Han, EM Phizicky, JS Weissman, D Koller Molecular systems biology 10 (12), 770, 2014 | 288 | 2014 |
A stress response that monitors and regulates mRNA structure is central to cold shock adaptation Y Zhang, DH Burkhardt, S Rouskin, GW Li, JS Weissman, CA Gross Molecular cell 70 (2), 274-286. e7, 2018 | 169 | 2018 |
Operon mRNAs are organized into ORF-centric structures that predict translation efficiency DH Burkhardt, S Rouskin, Y Zhang, GW Li, JS Weissman, CA Gross Elife 6, e22037, 2017 | 156 | 2017 |
Determination of RNA structural diversity and its role in HIV-1 RNA splicing PJ Tomezsko, VDA Corbin, P Gupta, H Swaminathan, M Glasgow, ... Nature 582 (7812), 438-442, 2020 | 155 | 2020 |
Microarray detection of human parainfluenzavirus 4 infection associated with respiratory failure in an immunocompetent adult CY Chiu, S Rouskin, A Koshy, A Urisman, K Fischer, S Yagi, D Schnurr, ... Clinical Infectious Diseases 43 (8), e71-e76, 2006 | 117 | 2006 |
Genome-wide diversity and selective pressure in the human rhinovirus AL Kistler, DR Webster, S Rouskin, V Magrini, JJ Credle, DP Schnurr, ... Virology journal 4, 1-19, 2007 | 109 | 2007 |
Utility of DNA microarrays for detection of viruses in acute respiratory tract infections in children CY Chiu, A Urisman, TL Greenhow, S Rouskin, S Yagi, D Schnurr, ... The Journal of pediatrics 153 (1), 76-83. e1, 2008 | 93 | 2008 |
Diagnosis of a critical respiratory illness caused by human metapneumovirus by use of a pan-virus microarray CY Chiu, AA Alizadeh, S Rouskin, JD Merker, E Yeh, S Yagi, D Schnurr, ... Journal of clinical microbiology 45 (7), 2340-2343, 2007 | 88 | 2007 |
Secondary structural ensembles of the SARS-CoV-2 RNA genome in infected cells TCT Lan, MF Allan, LE Malsick, JZ Woo, C Zhu, F Zhang, S Khandwala, ... Nature communications 13 (1), 1128, 2022 | 81 | 2022 |
Genome‐wide annotation and quantitation of translation by ribosome profiling NT Ingolia, GA Brar, S Rouskin, AM McGeachy, JS Weissman Current protocols in molecular biology 103 (1), 4.18. 1-4.18. 19, 2013 | 80 | 2013 |
Insights into the secondary structural ensembles of the full SARS-CoV-2 RNA genome in infected cells TCT Lan, MF Allan, LE Malsick, S Khandwala, SSY Nyeo, Y Sun, JU Guo, ... Biorxiv, 2020.06. 29.178343, 2021 | 75 | 2021 |
Life span extension by glucose restriction is abrogated by methionine supplementation: Cross-talk between glucose and methionine and implication of methionine as a key … K Zou, S Rouskin, K Dervishi, MA McCormick, A Sasikumar, C Deng, ... Science advances 6 (32), eaba1306, 2020 | 59 | 2020 |
An intranasal ASO therapeutic targeting SARS-CoV-2 C Zhu, JY Lee, JZ Woo, L Xu, X Nguyenla, LH Yamashiro, F Ji, SB Biering, ... Nature communications 13 (1), 4503, 2022 | 43 | 2022 |
Viral RNA structure analysis using DMS-MaPseq P Tomezsko, H Swaminathan, S Rouskin Methods 183, 68-75, 2020 | 26 | 2020 |
HnRNP A1/A2 proteins assemble onto 7SK snRNA via context dependent interactions L Luo, LY Chiu, A Sugarman, P Gupta, S Rouskin, BS Tolbert Journal of molecular biology 433 (9), 166885, 2021 | 18 | 2021 |