|Comprehensive molecular portraits of human breast tumours|
Cancer Genome Atlas Network
Nature 490 (7418), 61, 2012
|Reproducibility of SELDI-TOF protein patterns in serum: comparing datasets from different experiments|
KA Baggerly, JS Morris, KR Coombes
Bioinformatics 20 (5), 777-785, 2004
|MicroRNA signatures associated with cytogenetics and prognosis in acute myeloid leukemia|
R Garzon, S Volinia, CG Liu, C Fernandez-Cymering, T Palumbo, ...
Blood, The Journal of the American Society of Hematology 111 (6), 3183-3189, 2008
|An epithelial–mesenchymal transition gene signature predicts resistance to EGFR and PI3K inhibitors and identifies Axl as a therapeutic target for overcoming EGFR inhibitor …|
LA Byers, L Diao, J Wang, P Saintigny, L Girard, M Peyton, L Shen, Y Fan, ...
Clinical cancer research 19 (1), 279-290, 2013
|A guide to MATLAB: for beginners and experienced users|
BR Hunt, RL Lipsman, JM Rosenberg
Cambridge university press, 2014
|Curcumin (diferuloylmethane) alters the expression profiles of microRNAs in human pancreatic cancer cells|
M Sun, Z Estrov, Y Ji, KR Coombes, DH Harris, R Kurzrock
Molecular cancer therapeutics 7 (3), 464-473, 2008
|Co-occurring genomic alterations define major subsets of KRAS-mutant lung adenocarcinoma with distinct biology, immune profiles, and therapeutic vulnerabilities|
F Skoulidis, LA Byers, L Diao, VA Papadimitrakopoulou, P Tong, J Izzo, ...
Cancer discovery 5 (8), 860-877, 2015
|Feature extraction and quantification for mass spectrometry in biomedical applications using the mean spectrum|
JS Morris, KR Coombes, J Koomen, KA Baggerly, R Kobayashi
Bioinformatics 21 (9), 1764-1775, 2005
|Effect of KRAS Oncogene Substitutions on Protein Behavior: Implications for Signaling and Clinical Outcome|
NT Ihle, LA Byers, ES Kim, P Saintigny, JJ Lee, GR Blumenschein, A Tsao, ...
Journal of the National Cancer Institute 104 (3), 228-239, 2012
|Improved peak detection and quantification of mass spectrometry data acquired from surface‐enhanced laser desorption and ionization by denoising spectra with the undecimated …|
KR Coombes, S Tsavachidis, JS Morris, KA Baggerly, MC Hung, ...
Proteomics 5 (16), 4107-4117, 2005
|Expression of autotaxin and lysophosphatidic acid receptors increases mammary tumorigenesis, invasion, and metastases|
S Liu, M Umezu-Goto, M Murph, Y Lu, W Liu, F Zhang, S Yu, LC Stephens, ...
Cancer cell 15 (6), 539-550, 2009
|Signal in noise: evaluating reported reproducibility of serum proteomic tests for ovarian cancer|
KA Baggerly, JS Morris, SR Edmonson, KR Coombes
Journal of the National Cancer Institute 97 (4), 307-309, 2005
|Proteomic profiling identifies dysregulated pathways in small cell lung cancer and novel therapeutic targets including PARP1|
LA Byers, J Wang, MB Nilsson, J Fujimoto, P Saintigny, J Yordy, U Giri, ...
Cancer discovery 2 (9), 798-811, 2012
|Deriving chemosensitivity from cell lines: Forensic bioinformatics and reproducible research in high-throughput biology|
KA Baggerly, KR Coombes
The Annals of Applied Statistics, 1309-1334, 2009
|Quality control and peak finding for proteomics data collected from nipple aspirate fluid by surface-enhanced laser desorption and ionization|
KR Coombes, HA Fritsche Jr, C Clarke, JN Chen, KA Baggerly, JS Morris, ...
Clinical chemistry 49 (10), 1615-1623, 2003
|microRNA fingerprinting of CLL patients with chromosome 17p deletion identify a miR-21 score that stratifies early survival|
S Rossi, M Shimizu, E Barbarotto, MS Nicoloso, F Dimitri, D Sampath, ...
Blood, The Journal of the American Society of Hematology 116 (6), 945-952, 2010
|Direct tandem mass spectrometry reveals limitations in protein profiling experiments for plasma biomarker discovery|
JM Koomen, D Li, L Xiao, TC Liu, KR Coombes, J Abbruzzese, ...
Journal of proteome research 4 (3), 972-981, 2005
|Functional proteomic profiling of AML predicts response and survival|
SM Kornblau, R Tibes, YH Qiu, W Chen, HM Kantarjian, M Andreeff, ...
Blood, The Journal of the American Society of Hematology 113 (1), 154-164, 2009
|A comprehensive approach to the analysis of matrix‐assisted laser desorption/ionization‐time of flight proteomics spectra from serum samples|
KA Baggerly, JS Morris, J Wang, D Gold, LC Xiao, KR Coombes
Proteomics 3 (9), 1667-1672, 2003
|A patient-derived, pan-cancer EMT signature identifies global molecular alterations and immune target enrichment following epithelial-to-mesenchymal transition|
MP Mak, P Tong, L Diao, RJ Cardnell, DL Gibbons, WN William, ...
Clinical Cancer Research 22 (3), 609-620, 2016