| A large-scale evaluation of computational protein function prediction P Radivojac, WT Clark, TR Oron, AM Schnoes, T Wittkop, A Sokolov, ... Nature methods 10 (3), 221-227, 2013 | 750 | 2013 |
| Limitations and potentials of current motif discovery algorithms J Hu, B Li, D Kihara Nucleic acids research 33 (15), 4899-4913, 2005 | 288 | 2005 |
| An expanded evaluation of protein function prediction methods shows an improvement in accuracy Y Jiang, TR Oron, WT Clark, AR Bankapur, D D’Andrea, R Lepore, ... Genome biology 17 (1), 1-19, 2016 | 260 | 2016 |
| Development and large scale benchmark testing of the PROSPECTOR_3 threading algorithm J Skolnick, D Kihara, Y Zhang Proteins: Structure, Function, and Bioinformatics 56 (3), 502-518, 2004 | 194 | 2004 |
| TOUCHSTONE: an ab initio protein structure prediction method that uses threading-based tertiary restraints D Kihara, H Lu, A Kolinski, J Skolnick Proceedings of the National Academy of Sciences 98 (18), 10125-10130, 2001 | 171 | 2001 |
| Local energy landscape flattening: parallel hyperbolic Monte Carlo sampling of protein folding Y Zhang, D Kihara, J Skolnick Proteins: Structure, Function, and Bioinformatics 48 (2), 192-201, 2002 | 167 | 2002 |
| Enhanced automated function prediction using distantly related sequences and contextual association by PFP T Hawkins, S Luban, D Kihara Protein Science 15 (6), 1550-1556, 2006 | 160 | 2006 |
| Defrosting the frozen approximation: PROSPECTOR—a new approach to threading J Skolnick, D Kihara Proteins: structure, function, and bioinformatics 42 (3), 319-331, 2001 | 146 | 2001 |
| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 134 | 2011 |
| The PDB is a covering set of small protein structures D Kihara, J Skolnick Journal of molecular biology 334 (4), 793-802, 2003 | 132 | 2003 |
| PFP: Automated prediction of gene ontology functional annotations with confidence scores using protein sequence data T Hawkins, M Chitale, S Luban, D Kihara Proteins: Structure, Function, and Bioinformatics 74 (3), 566-582, 2009 | 131 | 2009 |
| Protein-protein docking using region-based 3D Zernike descriptors V Venkatraman, YD Yang, L Sael, D Kihara BMC bioinformatics 10 (1), 1-21, 2009 | 125 | 2009 |
| Structure and inhibition of EV-D68, a virus that causes respiratory illness in children Y Liu, J Sheng, A Fokine, G Meng, WH Shin, F Long, RJ Kuhn, D Kihara, ... Science 347 (6217), 71-74, 2015 | 121 | 2015 |
| Fast protein tertiary structure retrieval based on global surface shape similarity L Sael, B Li, D La, Y Fang, K Ramani, R Rustamov, D Kihara Proteins: Structure, Function, and Bioinformatics 72 (4), 1259-1273, 2008 | 118 | 2008 |
| The effect of long‐range interactions on the secondary structure formation of proteins D Kihara Protein Science 14 (8), 1955-1963, 2005 | 114 | 2005 |
| Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: A CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 109 | 2016 |
| Function prediction of uncharacterized proteins T Hawkins, D Kihara Journal of bioinformatics and computational biology 5 (01), 1-30, 2007 | 104 | 2007 |
| Generalized comparative modeling (GENECOMP): a combination of sequence comparison, threading, and lattice modeling for protein structure prediction and refinement A Kolinski, MR Betancourt, D Kihara, P Rotkiewicz, J Skolnick Proteins: Structure, Function, and Bioinformatics 44 (2), 133-149, 2001 | 103 | 2001 |
| ESG: extended similarity group method for automated protein function prediction M Chitale, T Hawkins, C Park, D Kihara Bioinformatics 25 (14), 1739-1745, 2009 | 100 | 2009 |
| Community‐wide evaluation of methods for predicting the effect of mutations on protein–protein interactions R Moretti, SJ Fleishman, R Agius, M Torchala, PA Bates, PL Kastritis, ... Proteins: Structure, Function, and Bioinformatics 81 (11), 1980-1987, 2013 | 93 | 2013 |
Lee SaelAssociate Professor in the Dept. of Software and Computer Engineering at Ajou UniversityVerified email at ajou.ac.kr
