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Koray Dogan Kaya
Koray Dogan Kaya
PhD, Bioinformatics Scientist
Verified email at alumni.boun.edu.tr
Title
Cited by
Cited by
Year
Accelerated and improved differentiation of retinal organoids from pluripotent stem cells in rotating-wall vessel bioreactors
T DiStefano, HY Chen, C Panebianco, KD Kaya, MJ Brooks, L Gieser, ...
Stem cell reports 10 (1), 300-313, 2018
1852018
Transcriptome dynamics of developing photoreceptors in three-dimensional retina cultures recapitulates temporal sequence of human cone and rod differentiation revealing cell …
R Kaewkhaw, KD Kaya, M Brooks, K Homma, J Zou, V Chaitankar, M Rao, ...
Stem cells 33 (12), 3504-3518, 2015
1682015
NRL-regulated transcriptome dynamics of developing rod photoreceptors
JW Kim, HJ Yang, MJ Brooks, L Zelinger, G Karakülah, N Gotoh, A Boleda, ...
Cell reports 17 (9), 2460-2473, 2016
1002016
Three-dimensional retinal organoids from mouse pluripotent stem cells mimic in vivo development with enhanced stratification and rod photoreceptor differentiation
HY Chen, KD Kaya, L Dong, A Swaroop
Molecular vision 22, 1077, 2016
932016
Pharmacologic fibroblast reprogramming into photoreceptors restores vision
B Mahato, KD Kaya, Y Fan, N Sumien, RA Shetty, W Zhang, D Davis, ...
Nature 581 (7806), 83-88, 2020
722020
Transcriptome-based molecular staging of human stem cell-derived retinal organoids uncovers accelerated photoreceptor differentiation by 9-cis retinal
KD Kaya, HY Chen, MJ Brooks, RA Kelley, H Shimada, K Nagashima, ...
Molecular vision 25, 663, 2019
682019
Treatment paradigms for retinal and macular diseases using 3-D retina cultures derived from human reporter pluripotent stem cell lines
R Kaewkhaw, M Swaroop, K Homma, J Nakamura, M Brooks, KD Kaya, ...
Investigative ophthalmology & visual science 57 (5), ORSFl1-ORSFl11, 2016
592016
Loss of MACF1 abolishes ciliogenesis and disrupts apicobasal polarity establishment in the retina
HL May-Simera, JD Gumerson, C Gao, M Campos, SM Cologna, T Beyer, ...
Cell reports 17 (5), 1399-1413, 2016
472016
mESAdb: microRNA expression and sequence analysis database
KD Kaya, G Karakülah, CM Yakıcıer, AC Acar, Ö Konu
Nucleic acids research 39 (suppl_1), D170-D180, 2011
472011
Retinal organoids derived from hiPSCs of an AIPL1-LCA patient maintain cytoarchitecture despite reduced levels of mutant AIPL1
D Lukovic, A Artero Castro, KD Kaya, D Munezero, L Gieser, ...
Scientific Reports 10 (1), 5426, 2020
402020
Cone-rod homeobox CRX controls presynaptic active zone formation in photoreceptors of mammalian retina
J Assawachananont, SY Kim, KD Kaya, R Fariss, JE Roger, A Swaroop
Human Molecular Genetics 27 (20), 3555-3567, 2018
182018
Accelerated and improved differentiation of retinal organoids from pluripotent stem cells in rotating-wall vessel bioreactors
TJ DiStefano, HY Chen, C Panebianco, KD Kaya, MJ Brooks, L Gieser, ...
Stem Cell Reports 16 (1), 224, 2021
62021
Retinal pigment epithelium transcriptome analysis in chronic smoking reveals a suppressed innate immune response and activation of differentiation pathways
L Wang, KD Kaya, S Kim, MJ Brooks, J Wang, Y Xin, J Qian, A Swaroop, ...
Free Radical Biology and Medicine 156, 176-189, 2020
32020
MicroRNA sequence and expression database
KD Kaya, G Karakulah, C Yakicier, O Konu
BMC Systems Biology 1, 1-2, 2007
12007
Single-cell profiling identifies a CD8bright CD244bright Natural Killer cell subset that reflects disease activity in HLA-A29-positive birdshot chorioretinopathy
PR Nath, M Maclean, V Nagarajan, JW Lee, M Yakin, A Kumar, H Nadali, ...
medRxiv, 2022.09. 11.22279821, 2022
2022
High dimensional profiling and immune monitoring of Uveitis patients
PR Nath, M Maclean, J Lee, A Kumar, H Nadali, M Yakin, S Kodati, ...
Investigative Ophthalmology & Visual Science 63 (7), 2679-2679, 2022
2022
Restoration of vision by chemically reprogrammed photoreceptors
B Mahato, KD Kaya, Y Fan, N Sumien, R Shetty, D Davis, T Thomas Mock, ...
2019
Three-dimensional retinal organoids from induced pluripotent stem cells derived from rd16 mouse model of CEP290-LCA
H Chen, KD Kaya, CK Jiang, A Mondal, M Brooks, J Kim, M Swaroop, ...
Investigative Ophthalmology & Visual Science 59 (9), 575-575, 2018
2018
RetSeq: Next Generation Sequencing Database for Exploring Retinal Development, Aging and Disease.
KD Kaya, M Brooks, HJ Yang, JW Kim, G Karakulah, A Swaroop
Investigative Ophthalmology & Visual Science 56 (7), 1240-1240, 2015
2015
Multivariate analysis of expression and sequence characteristics of miRNAs
KD Kaya, O Konu, C Yakicier
FEBS JOURNAL 273, 247-247, 2006
2006
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Articles 1–20