Christian Iseli
Christian Iseli
Head of BioInformatics Competence Center, EPFL, Switzerland
Verified email at - Homepage
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ESTScan: a program for detecting, evaluating, and reconstructing potential coding regions in EST sequences.
C Iseli, CV Jongeneel, P Bucher
ISMB 99, 138-148, 1999
Assessment of transcript reconstruction methods for RNA-seq
T Steijger, JF Abril, PG Engström, F Kokocinski, TJ Hubbard, R Guigó, ...
Nature methods 10 (12), 1177-1184, 2013
Exome sequencing identifies recurrent somatic MAP2K1 and MAP2K2 mutations in melanoma
SI Nikolaev, D Rimoldi, C Iseli, A Valsesia, D Robyr, C Gehrig, ...
Nature genetics 44 (2), 133-139, 2012
Personalized cancer vaccine effectively mobilizes antitumor T cell immunity in ovarian cancer
JL Tanyi, S Bobisse, E Ophir, S Tuyaerts, A Roberti, R Genolet, ...
Science translational medicine 10 (436), eaao5931, 2018
Key parameters of tumor epitope immunogenicity revealed through a consortium approach improve neoantigen prediction
DK Wells, MM van Buuren, KK Dang, VM Hubbard-Lucey, KCF Sheehan, ...
Cell 183 (3), 818-834. e13, 2020
An atlas of human gene expression from massively parallel signature sequencing (MPSS)
CV Jongeneel, M Delorenzi, C Iseli, D Zhou, CD Haudenschild, ...
Genome research 15 (7), 1007-1014, 2005
Identification of cancer/testis-antigen genes by massively parallel signature sequencing
YT Chen, MJ Scanlan, CA Venditti, R Chua, G Theiler, BJ Stevenson, ...
Proceedings of the National Academy of Sciences 102 (22), 7940-7945, 2005
Identification of CT46/HORMAD1, an immunogenic cancer/testis antigen encoding a putative meiosis-related protein
YT Chen, CA Venditti, G Theiler, BJ Stevenson, C Iseli, AO Gure, ...
Cancer immunity 5 (1), 2005
Modeling sequencing errors by combining Hidden Markov models
C Lottaz, C Iseli, CV Jongeneel, P Bucher
Bioinformatics 19 (Suppl2), ii103-ii112, 2003
Establishment of the epithelial-specific transcriptome of normal and malignant human breast cells based on MPSS and array expression data
A Grigoriadis, A Mackay, JS Reis-Filho, D Steele, C Iseli, BJ Stevenson, ...
Breast Cancer Research 8, 1-15, 2006
A C++ compiler for FPGA custom execution units synthesis
C Iseli, E Sanchez
Proceedings IEEE Symposium on FPGAs for Custom Computing Machines, 173-179, 1995
Comprehensive sampling of gene expression in human cell lines with massively parallel signature sequencing
CV Jongeneel, C Iseli, BJ Stevenson, GJ Riggins, A Lal, A Mackay, ...
Proceedings of the National Academy of Sciences 100 (8), 4702-4705, 2003
Transcriptome-guided characterization of genomic rearrangements in a breast cancer cell line
Q Zhao, OL Caballero, S Levy, BJ Stevenson, C Iseli, SJ De Souza, ...
Proceedings of the National Academy of Sciences 106 (6), 1886-1891, 2009
The generation and utilization of a cancer-oriented representation of the human transcriptome by using expressed sequence tags
H Brentani, OL Caballero, AA Camargo, AM da Silva, WA da Silva Jr, ...
Proceedings of the National Academy of Sciences 100 (23), 13418-13423, 2003
Sensitive and frequent identification of high avidity neo-epitope specific CD8+ T cells in immunotherapy-naive ovarian cancer
S Bobisse, R Genolet, A Roberti, JL Tanyi, J Racle, BJ Stevenson, C Iseli, ...
Nature communications 9 (1), 1092, 2018
Probabilistic base calling of Solexa sequencing data
J Rougemont, A Amzallag, C Iseli, L Farinelli, I Xenarios, F Naef
BMC bioinformatics 9, 1-12, 2008
Low number of fixed somatic mutations in a long-lived oak tree
E Schmid-Siegert, N Sarkar, C Iseli, S Calderon, C Gouhier-Darimont, ...
Nature Plants 3 (12), 926-929, 2017
Spyder: A reconfigurable VLIW processor using FPGAs
C Iseli, E Sanchez
[1993] Proceedings IEEE Workshop on FPGAs for Custom Computing Machines, 17-24, 1993
Rapid evolution of cancer/testis genes on the X chromosome
BJ Stevenson, C Iseli, S Panji, M Zahn-Zabal, W Hide, LJ Old, AJ Simpson, ...
BMC genomics 8, 1-11, 2007
Cell-free DNA testing of an extended range of chromosomal anomalies: clinical experience with 6,388 consecutive cases
G Pescia, N Guex, C Iseli, L Brennan, M Osteras, I Xenarios, L Farinelli, ...
Genetics in Medicine 19 (2), 169-175, 2017
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