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Victoria Popic
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Cited by
Year
Fast and scalable inference of multi-sample cancer lineages
V Popic, R Salari, I Hajirasouliha, D Kashef-Haghighi, RB West, ...
Genome biology 16, 1-17, 2015
2272015
Short read alignment with populations of genomes
L Huang, V Popic, S Batzoglou
Bioinformatics 29 (13), i361-i370, 2013
1522013
Abstractions for usable information flow control in Aeolus
W Cheng, DRK Ports, D Schultz, V Popic, A Blankstein, J Cowling, ...
2012 USENIX Annual Technical Conference (USENIX ATC 12), 139-151, 2012
1192012
Composition and reuse with compiled domain-specific languages
AK Sujeeth, T Rompf, KJ Brown, HJ Lee, H Chafi, V Popic, M Wu, ...
ECOOP 2013–Object-Oriented Programming: 27th European Conference …, 2013
902013
High-throughput RNA isoform sequencing using programmed cDNA concatenation
AM Al’Khafaji, JT Smith, KV Garimella, M Babadi, V Popic, ...
Nature Biotechnology, 1-5, 2023
59*2023
A hybrid cloud read aligner based on MinHash and kmer voting that preserves privacy
V Popic, S Batzoglou
Nature communications 8 (1), 15311, 2017
53*2017
Fast metagenomic binning via hashing and bayesian clustering
V Popic, V Kuleshov, M Snyder, S Batzoglou
Journal of Computational Biology 25 (7), 677-688, 2018
15*2018
Cue: a deep-learning framework for structural variant discovery and genotyping
V Popic, C Rohlicek, F Cunial, I Hajirasouliha, D Meleshko, K Garimella, ...
Nature methods 20 (4), 559-568, 2023
132023
DNA sequencing using hydrogel beads
YS Wu, F Gorpe-Yasar, TK Khurana, V Popic, EB Jaeger, M Ronaghi
US Patent 11,180,752, 2021
102021
Meltos: multi-sample tumor phylogeny reconstruction for structural variants
C Ricketts, D Seidman, V Popic, F Hormozdiari, S Batzoglou, ...
Bioinformatics 36 (4), 1082-1090, 2020
102020
Using LICHeE and BAMSE for reconstructing cancer phylogenetic trees
C Ricketts, V Popic, H Toosi, I Hajirasouliha
Current protocols in bioinformatics 62 (1), e49, 2018
72018
Audit trails in the Aeolus distributed security platform
V Popic
52010
Parallizing the push-relabel max flow algorithm
V Popic, J Vélez
32010
Spatial indexing of genetic material and library preparation using hydrogel beads and flow cells
TK Khurana, YS Wu, XJ Chen, F Gorpe-Yasar, YY Lin, V Popic, EB Jaeger, ...
US Patent 11,352,668, 2022
12022
CTAT-LR-fusion: accurate fusion transcript identification from long and short read isoform sequencing at bulk or single cell resolution
Q Qin, V Popic, H Yu, E White, A Khorgade, A Shin, K Wienand, A Dondi, ...
bioRxiv, 2024.02. 24.581862, 2024
2024
Secure Discovery of Genetic Relatives across Large-Scale and Distributed Genomic Datasets
MMH Hong, D Froelicher, R Magner, V Popic, B Berger, H Cho
bioRxiv, 2024.02. 16.580613, 2024
2024
Spatial Indexing of Genetic Material and Library Preparation Using Hydrogel Beads and Flow Cells
TK Khurana, YS Wu, XJ Chen, F Gorpe-Yasar, YY Lin, V Popic, EB Jaeger, ...
US Patent App. 18/180,622, 2023
2023
Developing bioinformatics capacity in Moldova
V Munteanu, D Ciorbă, V Popic, S Mangul
Electronics, Communications and Computing, 22-23, 2023
2023
Dna sequencing using hydrogel beads
YS Wu, F Gorpe-Yasar, TK Khurana, V Popic, EB Jaeger, M Ronaghi
US Patent App. 17/451,771, 2022
2022
High-throughput RNA isoform sequencing using programmable cDNA concatenation
AM Al’Khafaji, JT Smith, KV Garimella, M Babadi, M Sade-Feldman, ...
BioRxiv, 2021.10. 01.462818, 2021
2021
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Articles 1–20