Andreas Tjärnberg
Andreas Tjärnberg
Center for Genomics and Systems Biology, NYU
nyu.edu üzerinde doğrulanmış e-posta adresine sahip - Ana Sayfa
Başlık
Alıntı yapanlar
Alıntı yapanlar
Yıl
Comparative interactomics with Funcoup 2.0
A Alexeyenko, T Schmitt, A Tjärnberg, D Guala, O Frings, ...
Nucleic acids research 40 (D1), D821-D828, 2012
572012
Functional association networks as priors for gene regulatory network inference
ME Studham, A Tjärnberg, TEM Nordling, S Nelander, ELL Sonnhammer
Bioinformatics 30 (12), i130-i138, 2014
402014
A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseases
DR Gawel, J Serra-Musach, S Lilja, J Aagesen, A Arenas, B Asking, ...
Genome medicine 11 (1), 1-25, 2019
252019
Optimal sparsity criteria for network inference
A Tjärnberg, TEM Nordling, M Studham, ELL Sonnhammer
Journal of Computational Biology 20 (5), 398-408, 2013
142013
Avoiding pitfalls in L 1-regularised inference of gene networks
A Tjärnberg, TEM Nordling, M Studham, S Nelander, ELL Sonnhammer
Molecular Biosystems 11 (1), 287-296, 2015
112015
Deriving disease modules from the compressed transcriptional space embedded in a deep autoencoder
SK Dwivedi, A Tjärnberg, J Tegnér, M Gustafsson
Nature communications 11 (1), 1-10, 2020
92020
Cancer network activity associated with therapeutic response and synergism
J Serra-Musach, F Mateo, E Capdevila-Busquets, GR de Garibay, ...
Genome medicine 8 (1), 1-12, 2016
82016
A generalized framework for controlling FDR in gene regulatory network inference
D Morgan, T Nordling, A Tjarnberg
Bioinformatics, 2018
72018
GeneSPIDER–gene regulatory network inference benchmarking with controlled network and data properties
A Tjärnberg, DC Morgan, M Studham, TEM Nordling, ELL Sonnhammer
Molecular BioSystems 13 (7), 1304-1312, 2017
62017
LASSIM—A network inference toolbox for genome-wide mechanistic modeling
R Magnusson, GP Mariotti, M Köpsén, W Lövfors, DR Gawel, R Jörnsten, ...
PLoS computational biology 13 (6), e1005608, 2017
32017
Optimal tuning of weighted kNN-and diffusion-based methods for denoising single cell genomics data
A Tjärnberg, O Mahmood, CA Jackson, GA Saldi, K Cho, LA Christiaen, ...
PLOS Computational Biology 17 (1), e1008569, 2021
12021
Perturbation-based gene regulatory network inference to unravel oncogenic mechanisms
D Morgan, M Studham, A Tjärnberg, H Weishaupt, FJ Swartling, ...
Scientific reports 10 (1), 1-12, 2020
12020
Correction to: A validated single-cell-based strategy to identify diagnostic and therapeutic targets in complex diseases
DR Gawel, J Serra-Musach, S Lilja, J Aagesen, A Arenas, B Asking, ...
Genome medicine 12 (1), 1-1, 2020
2020
Uncovering cancer gene regulation by accurate regulatory network inference from uninformative data
D Seçilmiş, T Hillerton, D Morgan, A Tjärnberg, S Nelander, TEM Nordling, ...
NPJ systems biology and applications 6, 2020
2020
A Subset Selection Method for Accurate Gene Regulatory Network Inference of Uninformative Datasets
D Secilmis, D Morgan, A Tjärnberg, S Nelander, T Nordling, ...
2019
Exploring the Boundaries of Gene Regulatory Network Inference
A Tjärnberg
Department of Biochemistry and Biophysics, Stockholm University, 2015
2015
Sistem, işlemi şu anda gerçekleştiremiyor. Daha sonra yeniden deneyin.
Makaleler 1–16