Gustavo Sacomoto
Gustavo Sacomoto
Post-Doc Researcher INRIA (Lyon, France)
Verified email at inria.fr
Title
Cited by
Cited by
Year
K is s plice: de-novo calling alternative splicing events from rna-seq data
GAT Sacomoto, J Kielbassa, R Chikhi, R Uricaru, P Antoniou, MF Sagot, ...
BMC bioinformatics 13 (6), 1-12, 2012
1112012
Optimal listing of cycles and st-paths in undirected graphs
E Birmelé, R Ferreira, R Grossi, A Marino, N Pisanti, R Rizzi, G Sacomoto
Proceedings of the twenty-fourth annual ACM-SIAM symposium on Discrete …, 2013
782013
Using cascading Bloom filters to improve the memory usage for de Brujin graphs
K Salikhov, G Sacomoto, G Kucherov
Algorithms for Molecular Biology 9 (1), 1-10, 2014
732014
Using cascading Bloom filters to improve the memory usage for de Brujin graphs
K Salikhov, G Sacomoto, G Kucherov
International Workshop on Algorithms in Bioinformatics, 364-376, 2013
572013
Lossless filter for multiple repeats with bounded edit distance
P Peterlongo, GAT Sacomoto, AP do Lago, N Pisanti, MF Sagot
Algorithms for Molecular Biology 4 (1), 1-20, 2009
292009
Complementarity of assembly-first and mapping-first approaches for alternative splicing annotation and differential analysis from RNAseq data
C Benoit-Pilven, C Marchet, E Chautard, L Lima, MP Lambert, ...
Scientific reports 8 (1), 1-13, 2018
192018
Efficient bubble enumeration in directed graphs
E Birmelé, P Crescenzi, R Ferreira, R Grossi, V Lacroix, A Marino, ...
International Symposium on String Processing and Information Retrieval, 118-129, 2012
192012
5th International Conference on Practical Applications of Computational Biology & Bioinformatics
MP Rocha, JMC Rodríguez, FF Riverola, A Valencia
Springer Science & Business Media, 2011
192011
Computing and listing st-paths in public transportation networks
K Böhmová, L Häfliger, M Mihalák, T Pröger, G Sacomoto, MF Sagot
Theory of Computing Systems 62 (3), 600-621, 2018
142018
Efficiently listing bounded length st-paths
R Rizzi, G Sacomoto, MF Sagot
International Workshop on Combinatorial Algorithms, 318-329, 2014
142014
Playing hide and seek with repeats in local and global de novo transcriptome assembly of short RNA-seq reads
L Lima, B Sinaimeri, G Sacomoto, H Lopez-Maestre, C Marchet, V Miele, ...
Algorithms for Molecular Biology 12 (1), 1-19, 2017
132017
Amortized -Delay Algorithm for Listing Chordless Cycles in Undirected Graphs
R Ferreira, R Grossi, R Rizzi, G Sacomoto, MF Sagot
European Symposium on Algorithms, 418-429, 2014
112014
A polynomial delay algorithm for the enumeration of bubbles with length constraints in directed graphs and its application to the detection of alternative splicing in RNA-seq data
G Sacomoto, V Lacroix, MF Sagot
International Workshop on Algorithms in Bioinformatics, 99-111, 2013
112013
Colib’read on galaxy: a tools suite dedicated to biological information extraction from raw NGS reads
Y Le Bras, O Collin, C Monjeaud, V Lacroix, É Rivals, C Lemaitre, V Miele, ...
GigaScience 5 (1), s13742-015-0105-2, 2016
72016
On bubble generators in directed graphs
V Acuna, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
International Workshop on Graph-Theoretic Concepts in Computer Science, 18-31, 2017
62017
Navigating in a sea of repeats in rna-seq without drowning
G Sacomoto, B Sinaimeri, C Marchet, V Miele, MF Sagot, V Lacroix
International Workshop on Algorithms in Bioinformatics, 82-96, 2014
62014
Algorithms in Bioinformatics
K Salikhov, G Sacomoto, G Kucherov
Springer, 2013
62013
Superstring Graph: a new approach for genome assembly
B Cazaux, G Sacomoto, E Rivals
International Conference on Algorithmic Applications in Management, 39-52, 2016
32016
On bubble generators in directed graphs
V Acuña, R Grossi, GF Italiano, L Lima, R Rizzi, G Sacomoto, MF Sagot, ...
Algorithmica 82 (4), 898-914, 2020
22020
Efficient algorithms for de novo assembly of alternative splicing events from RNA-seq data
G Sacomoto
arXiv preprint arXiv:1406.6047, 2014
22014
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Articles 1–20