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Jason M. Johnson
Jason M. Johnson
Dana-Farber Cancer Institute, Stanford, Harvard, Pfizer, Merck, PatientsLikeMe
Verified email at dfci.harvard.edu
Title
Cited by
Cited by
Year
Microarray analysis shows that some microRNAs downregulate large numbers of target mRNAs
LP Lim, NC Lau, P Garrett-Engele, A Grimson, JM Schelter, J Castle, ...
Nature 433 (7027), 769-773, 2005
59772005
Genome-wide survey of human alternative pre-mRNA splicing with exon junction microarrays
JM Johnson, J Castle, P Garrett-Engele, Z Kan, PM Loerch, CD Armour, ...
Science 302 (5653), 2141-2144, 2003
18162003
Mapping the genetic architecture of gene expression in human liver
EE Schadt, C Molony, E Chudin, K Hao, X Yang, PY Lum, A Kasarskis, ...
PLoS biology 6 (5), e107, 2008
11832008
Position-specific chemical modification of siRNAs reduces “off-target” transcript silencing
AL Jackson, J Burchard, D Leake, A Reynolds, J Schelter, J Guo, ...
Rna 12 (7), 1197-1205, 2006
10462006
Plasma MicroRNAs as sensitive and specific biomarkers of tissue injury
OF Laterza, L Lim, PW Garrett-Engele, K Vlasakova, N Muniappa, ...
Clinical chemistry 55 (11), 1977-1983, 2009
7582009
A quantitative atlas of polyadenylation in five mammals
A Derti, P Garrett-Engele, KD MacIsaac, RC Stevens, S Sriram, R Chen, ...
Genome research 22 (6), 1173-1183, 2012
6912012
Transcripts targeted by the microRNA-16 family cooperatively regulate cell cycle progression
PS Linsley, J Schelter, J Burchard, M Kibukawa, MM Martin, SR Bartz, ...
Molecular and cellular biology 27 (6), 2240-2252, 2007
6782007
A postnatal switch of CELF and MBNL proteins reprograms alternative splicing in the developing heart
A Kalsotra, X Xiao, AJ Ward, JC Castle, JM Johnson, CB Burge, ...
Proceedings of the National Academy of Sciences 105 (51), 20333-20338, 2008
5552008
Regulation of RNA splicing by the methylation-dependent transcriptional repressor methyl-CpG binding protein 2
JI Young, EP Hong, JC Castle, J Crespo-Barreto, AB Bowman, MF Rose, ...
Proceedings of the National Academy of Sciences 102 (49), 17551-17558, 2005
5502005
Simple, quantitative primer-extension PCR assay for direct monitoring of microRNAs and short-interfering RNAs
CK Raymond, BS Roberts, P Garrett-Engele, LP Lim, JM Johnson
Rna 11 (11), 1737-1744, 2005
5312005
Dark matter in the genome: evidence of widespread transcription detected by microarray tiling experiments
JM Johnson, S Edwards, D Shoemaker, EE Schadt
TRENDS in Genetics 21 (2), 93-102, 2005
4462005
Expression of 24,426 human alternative splicing events and predicted cis regulation in 48 tissues and cell lines
JC Castle, C Zhang, JK Shah, AV Kulkarni, A Kalsotra, TA Cooper, ...
Nature genetics 40 (12), 1416-1425, 2008
3622008
Defining the regulatory network of the tissue-specific splicing factors Fox-1 and Fox-2
C Zhang, Z Zhang, J Castle, S Sun, J Johnson, AR Krainer, MQ Zhang
Genes & development 22 (18), 2550-2563, 2008
3352008
Expression profiles of 50 xenobiotic transporter genes in humans and pre-clinical species: a resource for investigations into drug disposition
K Bleasby, JC Castle, CJ Roberts, C Cheng, WJ Bailey, JF Sina, ...
Xenobiotica 36 (10-11), 963-988, 2006
3172006
Digital transcriptome profiling using selective hexamer priming for cDNA synthesis
CD Armour, JC Castle, R Chen, T Babak, P Loerch, S Jackson, JK Shah, ...
Nature methods 6 (9), 647-649, 2009
2402009
Alignment and structure prediction of divergent protein families: periplasmic and outer membrane proteins of bacterial efflux pumps
JM Johnson, GM Church
Journal of molecular biology 287 (3), 695-715, 1999
2271999
Global survey of genomic imprinting by transcriptome sequencing
T Babak, B DeVeale, C Armour, C Raymond, MA Cleary, D van der Kooy, ...
Current biology 18 (22), 1735-1741, 2008
1972008
Definition, conservation and epigenetics of housekeeping and tissue-enriched genes
X She, CA Rohl, JC Castle, AV Kulkarni, JM Johnson, R Chen
BMC genomics 10, 1-12, 2009
1842009
Radar mapping of Mercury's polar anomalies
JK Harmon, MA Slade, RA Velez, A Crespo, MJ Dryer, JM Johnson
Nature 369 (6477), 213-215, 1994
1741994
Global regulation of alternative splicing during myogenic differentiation
CS Bland, ET Wang, A Vu, MP David, JC Castle, JM Johnson, CB Burge, ...
Nucleic acids research 38 (21), 7651-7664, 2010
1642010
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Articles 1–20