Rui Xia
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TBtools:an integrative toolkit developed for interactive analyses of big biological data
C Chen, H Chen, Y Zhang, HR Thomas, MH Frank, Y He, R Xia
Molecular Plant 13 (8), 1194-1202, 2020
TBtools, a toolkit for biologists integrating various biological data handling tools with a user-friendly interface
C Chen, H Chen, Y He, R Xia
BioRxiv, 289660, 2018
Phased, secondary, small interfering RNAs in posttranscriptional regulatory networks
Q Fei, R Xia, BC Meyers
The Plant Cell 25 (7), 2400-2415, 2013
Apple miRNAs and tasiRNAs with novel regulatory networks
R Xia, H Zhu, Y An, E Beers, Z Liu
Genome biology 13 (6), R47, 2012
Genome assembly with in vitro proximity ligation data and whole-genome triplication in lettuce
S Reyes-Chin-Wo, Z Wang, X Yang, A Kozik, S Arikit, C Song, L Xia, ...
Nature Communications 8 (1), 1-11, 2017
The Diversification of Plant NBS-LRR Defense Genes Directs the Evolution of MicroRNAs That Target Them
Y Zhang, R Xia, H Kuang, BC Meyers
Molecular biology and evolution 33 (10), 2692-2705, 2016
Evolution, functions, and mysteries of plant ARGONAUTE proteins
H Zhang, R Xia, BC Meyers, V Walbot
Current opinion in plant biology 27, 84-90, 2015
MicroRNA superfamilies descended from miR390 and their roles in secondary small interfering RNA biogenesis in eudicots
R Xia, BC Meyers, Z Liu, EP Beers, S Ye, Z Liu
The Plant Cell 25 (5), 1555-1572, 2013
An atlas of soybean small RNAs identifies phased siRNAs from hundreds of coding genes
S Arikit, R Xia, A Kakrana, K Huang, J Zhai, Z Yan, O Valdés-López, ...
The Plant Cell 26 (12), 4584-4601, 2014
Unique expression, processing regulation, and regulatory network of peach (Prunus persica) miRNAs
H Zhu, R Xia, B Zhao, Y An, CD Dardick, AM Callahan, Z Liu
BMC Plant Biology 12 (1), 149, 2012
Transcriptomics of shading-induced and NAA-induced abscission in apple (Malus domestica) reveals a shared pathway involving reduced photosynthesis, alterations in carbohydrate …
H Zhu, CD Dardick, EP Beers, AM Callanhan, R Xia, R Yuan
BMC plant biology 11 (1), 138, 2011
Extensive Families of miRNAs and PHAS Loci in Norway Spruce Demonstrate the Origins of Complex phasiRNA Networks in Seed Plants
R Xia, J Xu, S Arikit, B Meyers
Molecular Biology and Evolution, 2015
The emergence, evolution, and diversification of the miR390-TAS3-ARF pathway in land plants
R Xia, J Xu, BC Meyers
The Plant Cell 29 (6), 1232-1247, 2017
Small RNAs add zing to the zig-zag-zig model of plant defenses
Q Fei, Y Zhang, R Xia, BC Meyers
Molecular Plant-Microbe Interactions 29 (3), 165-169, 2016
24-nt reproductive phasiRNAs are broadly present in angiosperms
R Xia, C Chen, S Pokhrel, W Ma, K Huang, P Patel, F Wang, J Xu, Z Liu, ...
Nature communications 10 (1), 1-8, 2019
Wheat miR9678 affects seed germination by generating phased siRNAs and modulating abscisic acid/gibberellin signaling
G Guo, X Liu, F Sun, J Cao, N Huo, B Wuda, M Xin, Z Hu, J Du, R Xia, ...
The Plant Cell 30 (4), 796-814, 2018
Small RNAs, emerging regulators critical for the development of horticultural traits
C Chen, Z Zeng, Z Liu, R Xia
Horticulture research 5 (1), 1-14, 2018
Coupling of micro RNA‐directed phased small interfering RNA generation from long noncoding genes with alternative splicing and alternative polyadenylation in small RNA‐mediated …
W Ma, C Chen, Y Liu, M Zeng, BC Meyers, J Li, R Xia
New Phytologist 217 (4), 1535-1550, 2018
Identification and molecular characterization of an IDA-like gene from litchi, LcIDL1, whose ectopic expression promotes floral organ abscission in Arabidopsis
P Ying, C Li, X Liu, R Xia, M Zhao, J Li
Scientific reports 6 (1), 1-11, 2016
miR3954 is a trigger of phasi RNA s that affects flowering time in citrus
Y Liu, L Ke, G Wu, Y Xu, X Wu, R Xia, X Deng, Q Xu
The Plant Journal 92 (2), 263-275, 2017
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