Hector Corrada Bravo
Hector Corrada Bravo
Associate Professor of Computer Science, University of Maryland
Verified email at umiacs.umd.edu - Homepage
Title
Cited by
Cited by
Year
Orchestrating high-throughput genomic analysis with Bioconductor
W Huber, VJ Carey, R Gentleman, S Anders, M Carlson, BS Carvalho, ...
Nature methods 12 (2), 115-121, 2015
23332015
Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays
MJ Aryee, AE Jaffe, H Corrada-Bravo, C Ladd-Acosta, AP Feinberg, ...
Bioinformatics 30 (10), 1363-1369, 2014
21802014
Tackling the widespread and critical impact of batch effects in high-throughput data
JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ...
Nature Reviews Genetics 11 (10), 733-739, 2010
15952010
Differential abundance analysis for microbial marker-gene surveys
JN Paulson, OC Stine, HC Bravo, M Pop
Nature methods 10 (12), 1200-1202, 2013
13682013
Increased methylation variation in epigenetic domains across cancer types
KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ...
Nature genetics 43 (8), 768-775, 2011
10402011
Automated classification of bird and amphibian calls using machine learning: A comparison of methods
MA Acevedo, CJ Corrada-Bravo, H Corrada-Bravo, LJ Villanueva-Rivera, ...
Ecological Informatics 4 (4), 206-214, 2009
3042009
A system for operational aerosol optical depth data assimilation over global oceans
C Kuang, PH McMurry, AV McCormick, FL Eisele, SH Lee, LH Young, ...
J. Geophys. Res 113 (D10), D10208, 2007
2222007
Diarrhea in young children from low-income countries leads to large-scale alterations in intestinal microbiota composition
M Pop, AW Walker, J Paulson, B Lindsay, M Antonio, MA Hossain, ...
Genome biology 15 (6), 1-12, 2014
1752014
Large hypomethylated blocks as a universal defining epigenetic alteration in human solid tumors
W Timp, HC Bravo, OG McDonald, M Goggins, C Umbricht, M Zeiger, ...
Genome medicine 6 (8), 1-11, 2014
1422014
Influence of host gene transcription level and orientation on HIV-1 latency in a primary-cell model
L Shan, HC Yang, SA Rabi, HC Bravo, NS Shroff, RA Irizarry, H Zhang, ...
Journal of virology 85 (11), 5384-5393, 2011
1312011
metagenomeSeq: Statistical analysis for sparse high-throughput sequencing
JN Paulson, M Pop, HC Bravo
Bioconductor package 1 (0), 191, 2013
1252013
Transcriptome Remodeling in Trypanosoma cruzi and Human Cells during Intracellular Infection
Y Li, S Shah-Simpson, K Okrah, AT Belew, J Choi, KL Caradonna, ...
PLoS pathogens 12 (4), e1005511, 2016
1212016
Overcoming bias and systematic errors in next generation sequencing data
MA Taub, HC Bravo, RA Irizarry
Genome medicine 2 (12), 1-5, 2010
1072010
RNA-sequencing of the brain transcriptome implicates dysregulation of neuroplasticity, circadian rhythms and GTPase binding in bipolar disorder
N Akula, J Barb, X Jiang, JR Wendland, KH Choi, SK Sen, L Hou, ...
Molecular psychiatry 19 (11), 1179-1185, 2014
1052014
Model‐based quality assessment and base‐calling for second‐generation sequencing data
HC Bravo, RA Irizarry
Biometrics 66 (3), 665-674, 2010
802010
Ocean temperature forcing by aerosols across the Atlantic tropical cyclone development region
AT Evan, AK Heidinger, R Bennartz, V Bennington, NM Mahowald, ...
Geochemistry Geophysics Geosystems 9 (5), Q05V04, 2008
682008
Transcriptomic profiling of gene expression and RNA processing during Leishmania major differentiation
LAL Dillon, K Okrah, VK Hughitt, R Suresh, Y Li, MC Fernandes, AT Belew, ...
Nucleic acids research 43 (14), 6799-6813, 2015
672015
Epiviz: interactive visual analytics for functional genomics data
F Chelaru, L Smith, N Goldstein, HC Bravo
Nature methods 11 (9), 938-940, 2014
662014
Dual Transcriptome Profiling of Leishmania-Infected Human Macrophages Reveals Distinct Reprogramming Signatures
MC Fernandes, LAL Dillon, AT Belew, HC Bravo, DM Mosser, ...
MBio 7 (3), e00027-16, 2016
652016
Simultaneous transcriptional profiling of Leishmania major and its murine macrophage host cell reveals insights into host-pathogen interactions
LAL Dillon, R Suresh, K Okrah, HC Bravo, DM Mosser, NM El-Sayed
BMC genomics 16 (1), 1-15, 2015
652015
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