Atul J. Butte
Atul J. Butte
Director, Bakar Computational Health Sciences Institute, University of California, San Francisco
Verified email at ucsf.edu - Homepage
Title
Cited by
Cited by
Year
Coordinated reduction of genes of oxidative metabolism in humans with insulin resistance and diabetes: Potential role of PGC1 and NRF1
ME Patti, AJ Butte, S Crunkhorn, K Cusi, R Berria, S Kashyap, Y Miyazaki, ...
Proceedings of the National Academy of Sciences 100 (14), 8466-8471, 2003
21362003
Ten years of pathway analysis: current approaches and outstanding challenges
P Khatri, M Sirota, AJ Butte
PLoS Comput Biol 8 (2), e1002375, 2012
13422012
Mutual information relevance networks: functional genomic clustering using pairwise entropy measurements
AJ Butte, IS Kohane
Biocomputing 2000, 418-429, 1999
12351999
Personal omics profiling reveals dynamic molecular and medical phenotypes
R Chen, GI Mias, J Li-Pook-Than, L Jiang, HYK Lam, R Chen, E Miriami, ...
Cell 148 (6), 1293-1307, 2012
11432012
Scalable and accurate deep learning with electronic health records
A Rajkomar, E Oren, K Chen, AM Dai, N Hajaj, M Hardt, PJ Liu, X Liu, ...
NPJ Digital Medicine 1 (1), 1-10, 2018
9202018
Clinical assessment incorporating a personal genome
EA Ashley, AJ Butte, MT Wheeler, R Chen, TE Klein, FE Dewey, ...
The Lancet 375 (9725), 1525-1535, 2010
7412010
Discovering functional relationships between RNA expression and chemotherapeutic susceptibility using relevance networks
AJ Butte, P Tamayo, D Slonim, TR Golub, IS Kohane
Proceedings of the National Academy of Sciences 97 (22), 12182-12186, 2000
7292000
xCell: digitally portraying the tissue cellular heterogeneity landscape
D Aran, Z Hu, AJ Butte
Genome biology 18 (1), 1-14, 2017
7092017
Variation in the human immune system is largely driven by non-heritable influences
P Brodin, V Jojic, T Gao, S Bhattacharya, CJL Angel, D Furman, ...
Cell 160 (1-2), 37-47, 2015
7022015
The use and analysis of microarray data
A Butte
Nature reviews drug discovery 1 (12), 951-960, 2002
6572002
ClinGen--the Clinical Genome Resource
WMS Rehm HL, Berg JS, Brooks LD, Bustamante CD, Evans JP, Landrum MJ ...
New England Journal of Medicine 372 (23), 2235-42, 2015
6402015
Discovery and preclinical validation of drug indications using compendia of public gene expression data
M Sirota, JT Dudley, J Kim, AP Chiang, AA Morgan, A Sweet-Cordero, ...
Science translational medicine 3 (96), 96ra77-96ra77, 2011
6372011
Analysis of matched mRNA measurements from two different microarray technologies
WP Kuo, TK Jenssen, AJ Butte, L Ohno-Machado, IS Kohane
Bioinformatics 18 (3), 405-412, 2002
5962002
Systematic pan-cancer analysis of tumour purity
D Aran, M Sirota, AJ Butte
Nature communications 6 (1), 1-12, 2015
5622015
Severe hypothyroidism caused by type 3 iodothyronine deiodinase in infantile hemangiomas
SA Huang, HM Tu, JW Harney, M Venihaki, AJ Butte, HPW Kozakewich, ...
New England Journal of Medicine 343 (3), 185-189, 2000
5382000
Performance comparison of exome DNA sequencing technologies
MJ Clark, R Chen, HYK Lam, KJ Karczewski, R Chen, G Euskirchen, ...
Nature biotechnology 29 (10), 908-914, 2011
5122011
FoxO3 regulates neural stem cell homeostasis
VM Renault, VA Rafalski, AA Morgan, DAM Salih, JO Brett, AE Webb, ...
Cell stem cell 5 (5), 527-539, 2009
5082009
An environment-wide association study (EWAS) on type 2 diabetes mellitus
CJ Patel, J Bhattacharya, AJ Butte
PloS one 5 (5), e10746, 2010
5032010
Reference-based analysis of lung single-cell sequencing reveals a transitional profibrotic macrophage
D Aran, AP Looney, L Liu, E Wu, V Fong, A Hsu, S Chak, RP Naikawadi, ...
Nature immunology 20 (2), 163-172, 2019
4822019
Computational repositioning of the anticonvulsant topiramate for inflammatory bowel disease
JT Dudley, M Sirota, M Shenoy, RK Pai, S Roedder, AP Chiang, ...
Science translational medicine 3 (96), 96ra76-96ra76, 2011
4782011
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Articles 1–20