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Hakan Özadam
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Expanded encyclopaedias of DNA elements in the human and mouse genomes
JE Moore, MJ Purcaro, HE Pratt, CB Epstein, N Shoresh, J Adrian, T Kawli, ...
Nature 583 (7818), 699-710, 2020
10722020
Integrative detection and analysis of structural variation in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardımcı, ...
Nature genetics 50 (10), 1388-1398, 2018
2962018
The HoxD cluster is a dynamic and resilient TAD boundary controlling the segregation of antagonistic regulatory landscapes
E Rodríguez-Carballo, L Lopez-Delisle, Y Zhan, PJ Fabre, L Beccari, ...
Genes & development 31 (22), 2264-2281, 2017
1652017
A chromosome folding intermediate at the condensin-to-cohesin transition during telophase
K Abramo, AL Valton, SV Venev, H Ozadam, AN Fox, J Dekker
Nature cell biology 21 (11), 1393-1402, 2019
1512019
Measuring the reproducibility and quality of Hi-C data
GG Yardimci, H Ozadam, MEG Sauria, O Ursu, KK Yan, T Yang, ...
Genome biology 20 (57), 188755, 2019
146*2019
Systematic evaluation of chromosome conformation capture assays
B Akgol Oksuz, L Yang, S Abraham, SV Venev, N Krietenstein, KM Parsi, ...
Nature methods 18 (9), 1046-1055, 2021
1082021
The non-canonical SMC protein SmcHD1 antagonises TAD formation and compartmentalisation on the inactive X chromosome
MR Gdula, TB Nesterova, G Pintacuda, J Godwin, Y Zhan, H Ozadam, ...
Nature communications 10 (1), 30, 2019
972019
Transcriptional silencers in Drosophila serve a dual role as transcriptional enhancers in alternate cellular contexts
SS Gisselbrecht, A Palagi, JV Kurland, JM Rogers, H Ozadam, Y Zhan, ...
Molecular cell 77 (2), 324-337. e8, 2020
892020
An optimized kit-free method for making strand-specific deep sequencing libraries from RNA fragments
MJM Erin E Heyer, Hakan Ozadam, Emiliano P Ricci, Can Cenik
Nucleic acids research 43 (1), e2-e2, 2015
652015
Higher-order organization principles of pre-translational mRNPs
M Metkar, H Ozadam, BR Lajoie, M Imakaev, LA Mirny, J Dekker, ...
Molecular cell 72 (4), 715-726. e3, 2018
592018
Polycyclic codes over Galois rings with applications to repeated-root constacyclic codes
SR López-Permouth, H Özadam, F Özbudak, S Szabo
Finite Fields and Their Applications 19 (1), 16-38, 2013
542013
ASPeak: an abundance sensitive peak detection algorithm for RIP-Seq
A Kucukural, H Özadam, G Singh, MJ Moore, C Cenik
Bioinformatics 29 (19), 2485-2486, 2013
462013
Genes with 5′ terminal oligopyrimidine tracts preferentially escape global suppression of translation by the SARS-CoV-2 Nsp1 protein
S Rao, I Hoskins, T Tonn, PD Garcia, H Ozadam, ES Cenik, C Cenik
Rna 27 (9), 1025-1045, 2021
432021
Transcriptome-wide interrogation of the functional intronome by spliceosome profiling
W Chen, J Moore, H Ozadam, HP Shulha, N Rhind, Z Weng, MJ Moore
Cell 173 (4), 1031-1044. e13, 2018
372018
RiboFlow, RiboR and RiboPy: an ecosystem for analyzing ribosome profiling data at read length resolution
H Ozadam, M Geng, C Cenik
Bioinformatics 36 (9), 2929-2931, 2020
272020
The Minimum Hamming Distance of Cyclic Codes of Length 2ps
H Özadam, F Özbudak
International Symposium on Applied Algebra, Algebraic Algorithms, and Error …, 2009
272009
Secret sharing schemes and linear codes
H Özadam, F Özbudak, Z Saygı
null, 2007
182007
Single-cell quantification of ribosome occupancy in early mouse development
H Ozadam, T Tonn, CM Han, A Segura, I Hoskins, S Rao, V Ghatpande, ...
Nature, 1-8, 2023
152023
Large domains of heterochromatin direct the formation of short mitotic chromosome loops
MH Fitz-James, P Tong, AL Pidoux, H Ozadam, L Yang, SA White, ...
Elife 9, e57212, 2020
132020
An integrative framework for detecting structural variations in cancer genomes
JR Dixon, J Xu, V Dileep, Y Zhan, F Song, VT Le, GG Yardimci, ...
BioRxiv, 119651, 2017
132017
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