| Cytoscape: a software environment for integrated models of biomolecular interaction networks P Shannon, A Markiel, O Ozier, NS Baliga, JT Wang, D Ramage, N Amin, ... Genome research 13 (11), 2498-2504, 2003 | 21976 | 2003 |
| Cytoscape 2.8: new features for data integration and network visualization ME Smoot, K Ono, J Ruscheinski, PL Wang, T Ideker Bioinformatics 27 (3), 431-432, 2011 | 3915 | 2011 |
| Integrated genomic and proteomic analyses of a systematically perturbed metabolic network T Ideker, V Thorsson, JA Ranish, R Christmas, J Buhler, JK Eng, ... Science 292 (5518), 929-934, 2001 | 2444 | 2001 |
| Integration of biological networks and gene expression data using Cytoscape MS Cline, M Smoot, E Cerami, A Kuchinsky, N Landys, C Workman, ... Nature protocols 2 (10), 2366, 2007 | 2235 | 2007 |
| A NEW APPROACH TO DECODING LIFE: Systems Biology T Ideker, T Galitski, L Hood Annual review of genomics and human genetics 2 (1), 343-372, 2001 | 2099 | 2001 |
| Network‐based classification of breast cancer metastasis HY Chuang, E Lee, YT Liu, D Lee, T Ideker Molecular systems biology 3 (1), 140, 2007 | 1652 | 2007 |
| Genome-wide methylation profiles reveal quantitative views of human aging rates G Hannum, J Guinney, L Zhao, L Zhang, G Hughes, SV Sadda, B Klotzle, ... Molecular cell 49 (2), 359-367, 2013 | 1564 | 2013 |
| Integrated genomic characterization of papillary thyroid carcinoma N Agrawal, R Akbani, BA Aksoy, A Ally, H Arachchi, SL Asa, JT Auman, ... Cell 159 (3), 676-690, 2014 | 1373 | 2014 |
| Discovering regulatory and signalling circuits in molecular interaction networks T Ideker, O Ozier, B Schwikowski, AF Siegel Bioinformatics 18 (suppl_1), S233-S240, 2002 | 1314 | 2002 |
| A SARS-CoV-2 protein interaction map reveals targets for drug repurposing DE Gordon, GM Jang, M Bouhaddou, J Xu, K Obernier, KM White, ... Nature 583 (7816), 459-468, 2020 | 1276 | 2020 |
| A travel guide to Cytoscape plugins R Saito, ME Smoot, K Ono, J Ruscheinski, PL Wang, S Lotia, AR Pico, ... Nature methods 9 (11), 1069, 2012 | 1120 | 2012 |
| Global analysis of host-pathogen interactions that regulate early-stage HIV-1 replication R König, Y Zhou, D Elleder, TL Diamond, GMC Bonamy, JT Irelan, ... Cell 135 (1), 49-60, 2008 | 1017 | 2008 |
| Conserved patterns of protein interaction in multiple species R Sharan, S Suthram, RM Kelley, T Kuhn, S McCuine, P Uetz, T Sittler, ... Proceedings of the National Academy of Sciences 102 (6), 1974-1979, 2005 | 887 | 2005 |
| Protein networks in disease T Ideker, R Sharan Genome research 18 (4), 644-652, 2008 | 841 | 2008 |
| Human host factors required for influenza virus replication R König, S Stertz, Y Zhou, A Inoue, HH Hoffmann, S Bhattacharyya, ... Nature 463 (7282), 813-817, 2010 | 822 | 2010 |
| Complementary profiling of gene expression at the transcriptome and proteome levels in Saccharomyces cerevisiae TJ Griffin, SP Gygi, T Ideker, B Rist, J Eng, L Hood, R Aebersold Molecular & Cellular Proteomics 1 (4), 323-333, 2002 | 792 | 2002 |
| Differential network biology T Ideker, NJ Krogan Molecular systems biology 8 (1), 565, 2012 | 708 | 2012 |
| An atlas of combinatorial transcriptional regulation in mouse and man T Ravasi, H Suzuki, CV Cannistraci, S Katayama, VB Bajic, K Tan, ... Cell 140 (5), 744-752, 2010 | 688 | 2010 |
| Network-based stratification of tumor mutations M Hofree, JP Shen, H Carter, A Gross, T Ideker Nature methods 10 (11), 1108-1115, 2013 | 669 | 2013 |
| Conserved pathways within bacteria and yeast as revealed by global protein network alignment BP Kelley, R Sharan, RM Karp, T Sittler, DE Root, BR Stockwell, T Ideker Proceedings of the National Academy of Sciences 100 (20), 11394-11399, 2003 | 643 | 2003 |
Nevan KroganUniversity of California-San FranciscoVerified email at ucsf.edu
