Paul Ryvkin
Paul Ryvkin
Omniome, Inc.
Verified email at paulryvkin.com - Homepage
Title
Cited by
Cited by
Year
Massively parallel digital transcriptional profiling of single cells
GXY Zheng, JM Terry, P Belgrader, P Ryvkin, ZW Bent, R Wilson, ...
Nature communications 8 (1), 1-12, 2017
21542017
Genome-wide double-stranded RNA sequencing reveals the functional significance of base-paired RNAs in Arabidopsis
Q Zheng, P Ryvkin, F Li, I Dragomir, O Valladares, J Yang, K Cao, ...
PLoS Genet 6 (9), e1001141, 2010
1472010
Altered gene expression in the Werner and Bloom syndromes is associated with sequences having G-quadruplex forming potential
JE Johnson, K Cao, P Ryvkin, LS Wang, FB Johnson
Nucleic acids research 38 (4), 1114-1122, 2010
1392010
Global analysis of RNA secondary structure in two metazoans
F Li, Q Zheng, P Ryvkin, I Dragomir, Y Desai, S Aiyer, O Valladares, ...
Cell reports 1 (1), 69-82, 2012
1372012
Microarray-based cell-free DNA analysis improves noninvasive prenatal testing
K Juneau, PE Bogard, S Huang, M Mohseni, ET Wang, P Ryvkin, ...
Fetal diagnosis and therapy 36 (4), 282-286, 2014
972014
HAMR: high-throughput annotation of modified ribonucleotides
P Ryvkin, YY Leung, IM Silverman, M Childress, O Valladares, I Dragomir, ...
Rna 19 (12), 1684-1692, 2013
902013
Cell population analysis using single nucleotide polymorphisms from single cell transcriptomes
X Zheng, JH Bielas, MT Gregory, B Hindson, TS Mikkelsen, R Wilson, ...
US Patent App. 15/430,298, 2017
892017
Transformable tagging compositions, methods, and processes incorporating same
P Ryvkin, J Underwood, M Schnall-Levin, T Mikkelsen, B Hindson
US Patent App. 15/355,542, 2017
712017
Rap1 relocalization contributes to the chromatin-mediated gene expression profile and pace of cell senescence
JM Platt, P Ryvkin, JJ Wanat, G Donahue, MD Ricketts, SP Barrett, ...
Genes & development 27 (12), 1406-1420, 2013
702013
Methods and systems for processing polynucleotides
P Belgrader, Z Bent, VKS Gopalan, J Harada, C Hindson, MR Lenji, ...
US Patent 10,011,872, 2018
582018
Methods and systems for processing polynucleotides
P Belgrader, Z Bent, TS Mikkelsen, P Ryvkin, JM Terry
US Patent 10,323,278, 2019
462019
Massively parallel digital transcriptional profiling of single cells. Nat Commun. 2017; 8: 14049
GXY Zheng, JM Terry, P Belgrader, P Ryvkin, ZW Bent, R Wilson, ...
39
Massively parallel digital transcriptional profiling of single cells. Nat Commun 8: 14049
GX Zheng, JM Terry, P Belgrader, P Ryvkin, ZW Bent, R Wilson, ...
Molecular Therapy Untreated AdPNM Adloxp-PNM islets, 10-5, 2017
362017
Transcriptomic changes due to cytoplasmic TDP-43 expression reveal dysregulation of histone transcripts and nuclear chromatin
A Amlie-Wolf, P Ryvkin, R Tong, I Dragomir, ER Suh, Y Xu, ...
PLoS One 10 (10), e0141836, 2015
362015
CoRAL: predicting non-coding RNAs from small RNA-sequencing data
YY Leung, P Ryvkin, LH Ungar, BD Gregory, LS Wang
Nucleic acids research 41 (14), e137-e137, 2013
322013
Adaptive environment system and method of providing an adaptive environment
D Nevenka, Z John, M Thomas, J Radu
US Patent App. 10/011,872, 2003
322003
Duplication mechanism and disruptions in flanking regions determine the fate of Mammalian gene duplicates
J Jun, P Ryvkin, E Hemphill, C Nelson
Journal of Computational Biology 16 (9), 1253-1266, 2009
262009
Systems and methods for visualizing a pattern in a dataset
AY Wong, J Mellen, K Wu, P Ryvkin
US Patent 10,347,365, 2019
242019
Functionalized gel beads
Z Bent, E Meer, D Riordan, P Ryvkin, N Srinivas, J Terry
US Patent 10,745,742, 2020
212020
Methods for clonotype screening
AY Wong, J Mellen, K Wu, P Ryvkin
US Patent App. 15/984,324, 2018
212018
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Articles 1–20