| Community-wide assessment of protein-interface modeling suggests improvements to design methodology SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ... Journal of molecular biology 414 (2), 289-302, 2011 | 136 | 2011 |
| DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues P Ozbek, S Soner, B Erman, T Haliloglu Nucleic acids research 38 (suppl 2), W417-W423, 2010 | 45 | 2010 |
| gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations O Serçinoğlu, P Ozbek Nucleic Acids Research, Web Server Issue, 2018 | 32 | 2018 |
| Hot spots in a network of functional sites P Ozbek, S Soner, T Haliloglu PLOS ONE 8 (9), e74320, 2013 | 28 | 2013 |
| Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles O Serçinoğlu, P Ozbek Journal of Biomolecular Structure and Dynamics 36 (3), 724-740, 2018 | 9 | 2018 |
| Fracture mechanics analysis of arc shaped specimens for pipe grade polymers P Özbek, C Argyrakis, P Leevers Polymer Testing 28 (3), 357-361, 2009 | 8 | 2009 |
| ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism RM Aydınkal, O Serçinoğlu, P Ozbek Nucleic acids research 47 (W1), W471-W476, 2019 | 7 | 2019 |
| DynaFace: discrimination between obligatory and non-obligatory protein-protein interactions based on the complex’s dynamics S Soner, P Ozbek, JI Garzon, N Ben-Tal, T Haliloglu PLoS Comput Biol 11 (10), e1004461, 2015 | 6 | 2015 |
| New Machine Learning Applications to Accelerate Personalized Medicine in Breast Cancer: Rise of the Support Vector Machines ME Ozer, PO Sarica, KY Arga OMICS: A Journal of Integrative Biology 24 (5), 241-246, 2020 | 5 | 2020 |
| Dynamic characterization of HLA-B* 44 Alleles: A comparative molecular dynamics simulation study P Özbek Computational Biology and Chemistry 62 (C), 12-16, 2016 | 5 | 2016 |
| In Silico Databases and Tools for Drug Repurposing O Serçinoğlu, PO Sarica In Silico Drug Design, 703-742, 2019 | 3 | 2019 |
| A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis O Serçinoğlu, G Özcan, Z Kutlu Kabaş, P Ozbek Journal of Computer-Aided Molecular Design 30 (7), 569-581, 2016 | 3 | 2016 |
| Sequence-structure-function relationships in class I MHC: a local frustration perspective O Serçinoğlu, P Ozbek PLOS ONE 15 (5), 2020 | 2 | 2020 |
| Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy M Yazar, P Ozbek Journal of Computer-Aided Molecular Design, 2020 | 1 | 2020 |
| Next-Generation Sequencing Identifies BRCA1 and/or BRCA2 Mutations in Women at High Hereditary Risk for Breast Cancer with Shorter Telomere Length İ Peker Eyüboğlu, G Yenmiş, EN Bingöl, Ş Yüksel, F Tokat, P Özbek, ... OMICS: A Journal of Integrative Biology 24 (1), 5-15, 2020 | 1 | 2020 |
| How do mutations and allosteric inhibitors modulate caspase-7 activity? A molecular dynamics study EN Bingöl, O Serçinoğlu, P Ozbek Journal of Biomolecular Structure and Dynamics 37 (13), 3456-3466, 2019 | 1 | 2019 |
| HLA Moleküllerinde Peptit Ligandlarının Kompleks Stabilitesine Olan Etkisinin Araştırılması A BUNSUZ, O SERÇİNOĞLU, P ÖZBEK Marmara Fen Bilimleri Dergisi 30 (4), 403-414, 2018 | 1 | 2018 |
| In Silico Tools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review M Yazar, P Özbek OMICS: A Journal of Integrative Biology 25 (1), 23-37, 2021 | | 2021 |
| Identification of novel inhibitors of the ABC transporter BmrA O Serçinoğlu, D Senturk, FEA Kaya, FG Avci, T Tomašič, P Ozbek, ... Bioorganic Chemistry 105, 104452, 2020 | | 2020 |
| Computational investigation of peptide binding stabilities of HLA-B* 27 and HLA-B* 44 alleles A Bunsuz, O Serçinoğlu, P Ozbek Computational Biology and Chemistry 84, 107195, 2020 | | 2020 |
