Pemra OZBEK SARICA
Title
Cited by
Cited by
Year
Community-wide assessment of protein-interface modeling suggests improvements to design methodology
SJ Fleishman, TA Whitehead, EM Strauch, JE Corn, S Qin, HX Zhou, ...
Journal of molecular biology 414 (2), 289-302, 2011
1362011
DNABINDPROT: fluctuation-based predictor of DNA-binding residues within a network of interacting residues
P Ozbek, S Soner, B Erman, T Haliloglu
Nucleic acids research 38 (suppl 2), W417-W423, 2010
452010
gRINN: a tool for calculation of residue interaction energies and protein energy network analysis of molecular dynamics simulations
O Serçinoğlu, P Ozbek
Nucleic Acids Research, Web Server Issue, 2018
322018
Hot spots in a network of functional sites
P Ozbek, S Soner, T Haliloglu
PLOS ONE 8 (9), e74320, 2013
282013
Computational characterization of residue couplings and micropolymorphism-induced changes in the dynamics of two differentially disease-associated human MHC class-I alleles
O Serçinoğlu, P Ozbek
Journal of Biomolecular Structure and Dynamics 36 (3), 724-740, 2018
92018
Fracture mechanics analysis of arc shaped specimens for pipe grade polymers
P Özbek, C Argyrakis, P Leevers
Polymer Testing 28 (3), 357-361, 2009
82009
ProSNEx: a web-based application for exploration and analysis of protein structures using network formalism
RM Aydınkal, O Serçinoğlu, P Ozbek
Nucleic acids research 47 (W1), W471-W476, 2019
72019
DynaFace: discrimination between obligatory and non-obligatory protein-protein interactions based on the complex’s dynamics
S Soner, P Ozbek, JI Garzon, N Ben-Tal, T Haliloglu
PLoS Comput Biol 11 (10), e1004461, 2015
62015
New Machine Learning Applications to Accelerate Personalized Medicine in Breast Cancer: Rise of the Support Vector Machines
ME Ozer, PO Sarica, KY Arga
OMICS: A Journal of Integrative Biology 24 (5), 241-246, 2020
52020
Dynamic characterization of HLA-B* 44 Alleles: A comparative molecular dynamics simulation study
P Özbek
Computational Biology and Chemistry 62 (C), 12-16, 2016
52016
In Silico Databases and Tools for Drug Repurposing
O Serçinoğlu, PO Sarica
In Silico Drug Design, 703-742, 2019
32019
A computational docking study on the pH dependence of peptide binding to HLA-B27 sub-types differentially associated with ankylosing spondylitis
O Serçinoğlu, G Özcan, Z Kutlu Kabaş, P Ozbek
Journal of Computer-Aided Molecular Design 30 (7), 569-581, 2016
32016
Sequence-structure-function relationships in class I MHC: a local frustration perspective
O Serçinoğlu, P Ozbek
PLOS ONE 15 (5), 2020
22020
Revisiting allostery in CREB-binding protein (CBP) using residue-based interaction energy
M Yazar, P Ozbek
Journal of Computer-Aided Molecular Design, 2020
12020
Next-Generation Sequencing Identifies BRCA1 and/or BRCA2 Mutations in Women at High Hereditary Risk for Breast Cancer with Shorter Telomere Length
İ Peker Eyüboğlu, G Yenmiş, EN Bingöl, Ş Yüksel, F Tokat, P Özbek, ...
OMICS: A Journal of Integrative Biology 24 (1), 5-15, 2020
12020
How do mutations and allosteric inhibitors modulate caspase-7 activity? A molecular dynamics study
EN Bingöl, O Serçinoğlu, P Ozbek
Journal of Biomolecular Structure and Dynamics 37 (13), 3456-3466, 2019
12019
HLA Moleküllerinde Peptit Ligandlarının Kompleks Stabilitesine Olan Etkisinin Araştırılması
A BUNSUZ, O SERÇİNOĞLU, P ÖZBEK
Marmara Fen Bilimleri Dergisi 30 (4), 403-414, 2018
12018
In Silico Tools and Approaches for the Prediction of Functional and Structural Effects of Single-Nucleotide Polymorphisms on Proteins: An Expert Review
M Yazar, P Özbek
OMICS: A Journal of Integrative Biology 25 (1), 23-37, 2021
2021
Identification of novel inhibitors of the ABC transporter BmrA
O Serçinoğlu, D Senturk, FEA Kaya, FG Avci, T Tomašič, P Ozbek, ...
Bioorganic Chemistry 105, 104452, 2020
2020
Computational investigation of peptide binding stabilities of HLA-B* 27 and HLA-B* 44 alleles
A Bunsuz, O Serçinoğlu, P Ozbek
Computational Biology and Chemistry 84, 107195, 2020
2020
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Articles 1–20