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Sensing self and foreign circular RNAs by intron identity YG Chen, MV Kim, X Chen, PJ Batista, S Aoyama, JE Wilusz, A Iwasaki, ... Molecular cell 67 (2), 228-238. e5, 2017 | 379 | 2017 |
ATAC-see reveals the accessible genome by transposase-mediated imaging and sequencing X Chen, Y Shen, W Draper, JD Buenrostro, U Litzenburger, SW Cho, ... Nature methods 13 (12), 1013-1020, 2016 | 223 | 2016 |
Activation of PDGF pathway links LMNA mutation to dilated cardiomyopathy J Lee, V Termglinchan, S Diecke, I Itzhaki, CK Lam, P Garg, E Lau, ... Nature 572 (7769), 335-340, 2019 | 159 | 2019 |
PARP1-and CTCF-mediated interactions between active and repressed chromatin at the lamina promote oscillating transcription H Zhao, EG Sifakis, N Sumida, L Millán-Ariño, BA Scholz, JP Svensson, ... Molecular cell 59 (6), 984-997, 2015 | 150 | 2015 |
Joint single-cell DNA accessibility and protein epitope profiling reveals environmental regulation of epigenomic heterogeneity X Chen, UM Litzenburger, Y Wei, AN Schep, EL LaGory, H Choudhry, ... Nature communications 9 (1), 1-12, 2018 | 83 | 2018 |
3D ATAC-PALM: super-resolution imaging of the accessible genome L Xie, P Dong, X Chen, THS Hsieh, S Banala, M De Marzio, BP English, ... Nature methods 17 (4), 430-436, 2020 | 62 | 2020 |
Epigenomic priming of immune genes implicates oligodendroglia in multiple sclerosis susceptibility M Meijer, E Agirre, M Kabbe, CA van Tuijn, A Heskol, C Zheng, AM Falcao, ... Neuron 110 (7), 1193-1210. e13, 2022 | 42 | 2022 |
Focal amplifications are associated with chromothripsis events and diverse prognoses in gastric cardia adenocarcinoma XK Zhao, P Xing, X Song, M Zhao, L Zhao, Y Dang, LL Lei, RH Xu, ... Nature communications 12 (1), 1-14, 2021 | 32 | 2021 |
BRD2 compartmentalizes the accessible genome L Xie, P Dong, Y Qi, THS Hsieh, BP English, SK Jung, X Chen, ... Nature genetics 54 (4), 481-491, 2022 | 31 | 2022 |
The visualization of large organized chromatin domains enriched in the H3K9me2 mark within a single chromosome in a single cell X Chen, S Yammine, C Shi, M Tark-Dame, A Göndör, R Ohlsson Epigenetics 9 (11), 1439-1445, 2014 | 27 | 2014 |
Histone demethylase complexes KDM3A and KDM3B cooperate with OCT4/SOX2 to define a pluripotency gene regulatory network Z Zhu, X Wu, Q Li, J Zhang, S Yu, Q Shen, Z Zhou, Q Pan, W Yue, D Qin, ... The FASEB Journal 35 (6), e21664, 2021 | 26 | 2021 |
Chromatin in situ proximity (ChrISP): Single-cell analysis of chromatin proximities at a high resolution X Chen, C Shi, S Yammine, A Göndör, D Rönnlund, ... Biotechniques 56 (3), 117-124, 2014 | 21 | 2014 |
Phytohemagglutinin improves efficiency of electrofusing mammary gland epithelial cells into oocytes in goats YL Zhang, FJ Liu, DQ Sun, XQ Chen, Y Zhang, YM Zheng, MT Zhao, ... Theriogenology 69 (9), 1165-1171, 2008 | 21 | 2008 |
Super enhancers—Functional cores under the 3D genome J Zhang, W Yue, Y Zhou, M Liao, X Chen, J Hua Cell proliferation 54 (2), e12970, 2021 | 18 | 2021 |
Single-cell analysis reveals major histocompatibility complex II‒expressing keratinocytes in pressure ulcers with worse healing outcomes D Li, S Cheng, YU Pei, P Sommar, J Kärner, EK Herter, MA Toma, ... Journal of Investigative Dermatology 142 (3), 705-716, 2022 | 16 | 2022 |
Super-enhancers conserved within placental mammals maintain stem cell pluripotency J Zhang, Y Zhou, W Yue, Z Zhu, X Wu, S Yu, Q Shen, Q Pan, W Xu, ... Proceedings of the National Academy of Sciences 119 (40), e2204716119, 2022 | 15 | 2022 |
FACT-seq: profiling histone modifications in formalin-fixed paraffin-embedded samples with low cell numbers L Zhao, P Xing, VK Polavarapu, M Zhao, B Valero-Martínez, Y Dang, ... Nucleic Acids Research 49 (21), e125-e125, 2021 | 14 | 2021 |
Profiling chromatin accessibility in formalin-fixed paraffin-embedded samples VK Polavarapu, P Xing, Z Hua, Z Miao, L Mathot, L Zhao, G Rosen, ... Genome Research, gr. 275269.121, 2021 | 13* | 2021 |
The Thioesterase ACOT1 as a Regulator of Lipid Metabolism in Type 2 Diabetes Detected in a Multi-Omics Study of Human Liver M Cavalli, K Diamanti, Y Dang, P Xing, G Pan, X Chen, C Wadelius OMICS: A Journal of Integrative Biology 25 (10), 652-659, 2021 | 12 | 2021 |