| The PRIDE database and related tools and resources in 2019: improving support for quantification data Y Perez-Riverol, A Csordas, J Bai, M Bernal-Llinares, S Hewapathirana, ... Nucleic acids research 47 (D1), D442-D450, 2019 | 6190 | 2019 |
| Enhancement of grape seed oil extraction using a cell wall degrading enzyme cocktail CP Passos, S Yilmaz, CM Silva, MA Coimbra Food Chemistry 115 (1), 48-53, 2009 | 204 | 2009 |
| MaxDIA enables library-based and library-free data-independent acquisition proteomics P Sinitcyn, H Hamzeiy, F Salinas Soto, D Itzhak, F McCarthy, C Wichmann, ... Nature biotechnology 39 (12), 1563-1573, 2021 | 135 | 2021 |
| First community-wide, comparative cross-linking mass spectrometry study C Iacobucci, C Piotrowski, R Aebersold, BC Amaral, P Andrews, K Bernfur, ... Analytical chemistry 91 (11), 6953-6961, 2019 | 122 | 2019 |
| MaxQuant goes linux P Sinitcyn, S Tiwary, J Rudolph, P Gutenbrunner, C Wichmann, Ş Yılmaz, ... Nature methods 15 (6), 401-401, 2018 | 39 | 2018 |
| Cross‐linked peptide identification: A computational forest of algorithms Ş Yılmaz, GA Shiferaw, J Rayo, A Economou, L Martens, ... Mass spectrometry reviews 37 (6), 738-749, 2018 | 29 | 2018 |
| Xilmass: a new approach towards the identification of cross-linked peptides Yılmaz Ş, Drepper F, Hulstaert N, Cernic M, Gevaert K, Economou A, Warscheid ... Analytical Chemistry 88 (20), 9949–9957, 2016 | 29 | 2016 |
| Accurate and automated high-coverage identification of chemically cross-linked peptides with MaxLynx S Yılmaz, F Busch, N Nagaraj, J Cox Analytical Chemistry, 2022 | 24 | 2022 |
| Methods to Calculate Spectrum Similarity Ş Yilmaz, E Vandermarliere, L Martens Proteome Bioinformatics 1549, 75-100, 2017 | 23 | 2017 |
| A pipeline for differential proteomics in unsequenced species S Yılmaz, B Victor, N Hulstaert, E Vandermarliere, H Barsnes, S Degroeve, ... Journal of Proteome Research 15 (6), 1963-1970, 2016 | 14 | 2016 |
| Asn3, a Reliable, Robust, and Universal Lock Mass for Improved Accuracy in LC–MS and LC–MS/MS A Staes, J Vandenbussche, H Demol, M Goethals, S Yilmaz, N Hulstaert, ... Analytical chemistry 85 (22), 11054-11060, 2013 | 12 | 2013 |
| Cross-linking/Mass Spectrometry: A Community-Wide, Comparative Study Towards Establishing Best Practice Guidelines C Iacobucci, C Piotrowski, R Aebersold, BC Amaral, P Andrews, ... bioRxiv, 424697, 2018 | 3 | 2018 |
| From challenges to perspectives: Reflections of young scientists on the current state of academic research K Titeca, L Aerts, M Krols, L Vandersarren, Ö Akay, Ş Yılmaz, ... EMBO reports 15 (10), 1010-1014, 2014 | 1 | 2014 |
| Ray: A profile-based approach for homology matching of tandem-ms spectra to sequence databases Ş Yılmaz PQDT-Global, 2012 | | 2012 |
| Comparing fragmentation spectra from two parasitic worm species to discover unique peptides Ş Yılmaz, B Victor, N Hulstaert, G Gonnelli, P Dorny, M Palmblad, ... | | |
