|Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli|
M Babu, R Arnold, C Bundalovic-Torma, A Gagarinova, KS Wong, ...
PLoS genetics 10 (2), e1004120, 2014
|Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean|
B Samanfar, SJ Molnar, M Charette, A Schoenrock, F Dehne, A Golshani, ...
Theoretical and Applied Genetics 130 (2), 377-390, 2017
|Short co-occurring polypeptide regions can predict global protein interaction maps|
S Pitre, M Hooshyar, A Schoenrock, B Samanfar, M Jessulat, JR Green, ...
Scientific reports 2 (1), 1-10, 2012
|Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli|
J Vlasblom, K Zuberi, H Rodriguez, R Arnold, A Gagarinova, V Deineko, ...
Bioinformatics 31 (3), 306-310, 2015
|Efficient prediction of human protein-protein interactions at a global scale|
A Schoenrock, B Samanfar, S Pitre, M Hooshyar, K Jin, CA Phillips, ...
BMC bioinformatics 15 (1), 1-22, 2014
|Zinc oxide and silver nanoparticles toxicity in the baker's yeast, Saccharomyces cerevisiae|
I Galván Márquez, M Ghiyasvand, A Massarsky, M Babu, B Samanfar, ...
PloS one 13 (3), e0193111, 2018
|Recent advances in protein–protein interaction prediction: experimental and computational methods|
M Jessulat, S Pitre, Y Gui, M Hooshyar, K Omidi, B Samanfar, LH Tan, ...
Expert opinion on drug discovery 6 (9), 921-935, 2011
|Systematic genetic screens reveal the dynamic global functional organization of the bacterial translation machinery|
A Gagarinova, G Stewart, B Samanfar, S Phanse, CA White, H Aoki, ...
Cell reports 17 (3), 904-916, 2016
|Large-scale investigation of oxygen response mutants in Saccharomyces cerevisiae|
B Samanfar, K Omidi, M Hooshyar, B Laliberte, M Alamgir, A Seal, ...
Mol. BioSyst., 2013
|A global investigation of gene deletion strains that affect premature stop codon bypass in yeast, Saccharomyces cerevisiae|
B Samanfar, LH Tan, K Shostak, F Chalabian, Z Wu, M Alamgir, N Sunba, ...
Molecular Biosystems 10 (4), 916-924, 2014
|Phosphatase complex Pph3/Psy2 is involved in regulation of efficient non-homologous end-joining pathway in the yeast Saccharomyces cerevisiae|
K Omidi, M Hooshyar, M Jessulat, B Samanfar, M Sanders, D Burnside, ...
PloS one 9 (1), e87248, 2014
|Spindle checkpoint factors Bub1 and Bub2 promote DNA double-strand break repair by nonhomologous end joining|
M Jessulat, RH Malty, DH Nguyen-Tran, V Deineko, H Aoki, J Vlasblom, ...
Molecular and cellular biology 35 (14), 2448-2463, 2015
|Designing anti-Zika virus peptides derived from predicted human-Zika virus protein-protein interactions|
T Kazmirchuk, K Dick, DJ Burnside, B Barnes, H Moteshareie, ...
Computational biology and chemistry 71, 180-187, 2017
|Uncharacterized ORF HUR1 influences the efficiency of non-homologous end-joining repair in Saccharomyces cerevisiae|
K Omidi, M Jessulat, M Hooshyar, D Burnside, A Schoenrock, ...
Gene 639, 128-136, 2018
|The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A|
B Samanfar, K Shostak, H Moteshareie, M Hajikarimlou, S Shaikho, ...
PeerJ 5, e4037, 2017
|PIPE4: Fast PPI predictor for comprehensive inter-and cross-species interactomes|
K Dick, B Samanfar, B Barnes, ER Cober, B Mimee, SJ Molnar, KK Biggar, ...
Scientific reports 10 (1), 1-15, 2020
|Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal …|
H Moteshareie, M Hajikarimlou, A Mulet Indrayanti, D Burnside, ...
Plos one 13 (9), e0198704, 2018
|Elevated levels of ribosomal proteins eL36 and eL42 control expression of Hsp90 in rhabdomyosarcoma|
S Shaikho, CC Dobson, T Naing, B Samanfar, H Moteshareie, ...
Translation 4 (2), e1244395, 2016
|Identifying new variation at the J locus, previously identified as e6, in long juvenile ‘Paranagoiana’soybean|
N Nissan, ER Cober, M Sadowski, M Charette, A Golshani, B Samanfar
Theoretical and Applied Genetics 134 (4), 1007-1014, 2021
|In silico engineering of synthetic binding proteins from random amino acid sequences|
D Burnside, A Schoenrock, H Moteshareie, M Hooshyar, P Basra, ...
Iscience 11, 375-387, 2019