| Quantitative Genome-Wide Genetic Interaction Screens Reveal Global Epistatic Relationships of Protein Complexes in Escherichia coli M Babu, R Arnold, C Bundalovic-Torma, A Gagarinova, KS Wong, ... PLoS genetics 10 (2), e1004120, 2014 | 99 | 2014 |
| Mapping and identification of a potential candidate gene for a novel maturity locus, E10, in soybean B Samanfar, SJ Molnar, M Charette, A Schoenrock, F Dehne, A Golshani, ... Theoretical and Applied Genetics 130 (2), 377-390, 2017 | 92 | 2017 |
| Short co-occurring polypeptide regions can predict global protein interaction maps S Pitre, M Hooshyar, A Schoenrock, B Samanfar, M Jessulat, JR Green, ... Scientific reports 2 (1), 1-10, 2012 | 57 | 2012 |
| Novel function discovery with GeneMANIA: a new integrated resource for gene function prediction in Escherichia coli J Vlasblom, K Zuberi, H Rodriguez, R Arnold, A Gagarinova, V Deineko, ... Bioinformatics 31 (3), 306-310, 2015 | 42 | 2015 |
| Efficient prediction of human protein-protein interactions at a global scale A Schoenrock, B Samanfar, S Pitre, M Hooshyar, K Jin, CA Phillips, ... BMC bioinformatics 15 (1), 1-22, 2014 | 38 | 2014 |
| Zinc oxide and silver nanoparticles toxicity in the baker's yeast, Saccharomyces cerevisiae I Galván Márquez, M Ghiyasvand, A Massarsky, M Babu, B Samanfar, ... PloS one 13 (3), e0193111, 2018 | 37 | 2018 |
| Recent advances in protein–protein interaction prediction: experimental and computational methods M Jessulat, S Pitre, Y Gui, M Hooshyar, K Omidi, B Samanfar, LH Tan, ... Expert opinion on drug discovery 6 (9), 921-935, 2011 | 36 | 2011 |
| Systematic genetic screens reveal the dynamic global functional organization of the bacterial translation machinery A Gagarinova, G Stewart, B Samanfar, S Phanse, CA White, H Aoki, ... Cell reports 17 (3), 904-916, 2016 | 32 | 2016 |
| Large-scale investigation of oxygen response mutants in Saccharomyces cerevisiae B Samanfar, K Omidi, M Hooshyar, B Laliberte, M Alamgir, A Seal, ... Mol. BioSyst., 2013 | 28 | 2013 |
| A global investigation of gene deletion strains that affect premature stop codon bypass in yeast, Saccharomyces cerevisiae B Samanfar, LH Tan, K Shostak, F Chalabian, Z Wu, M Alamgir, N Sunba, ... Molecular Biosystems 10 (4), 916-924, 2014 | 24 | 2014 |
| Phosphatase complex Pph3/Psy2 is involved in regulation of efficient non-homologous end-joining pathway in the yeast Saccharomyces cerevisiae K Omidi, M Hooshyar, M Jessulat, B Samanfar, M Sanders, D Burnside, ... PloS one 9 (1), e87248, 2014 | 20 | 2014 |
| Spindle checkpoint factors Bub1 and Bub2 promote DNA double-strand break repair by nonhomologous end joining M Jessulat, RH Malty, DH Nguyen-Tran, V Deineko, H Aoki, J Vlasblom, ... Molecular and cellular biology 35 (14), 2448-2463, 2015 | 19 | 2015 |
| Designing anti-Zika virus peptides derived from predicted human-Zika virus protein-protein interactions T Kazmirchuk, K Dick, DJ Burnside, B Barnes, H Moteshareie, ... Computational biology and chemistry 71, 180-187, 2017 | 18 | 2017 |
| Uncharacterized ORF HUR1 influences the efficiency of non-homologous end-joining repair in Saccharomyces cerevisiae K Omidi, M Jessulat, M Hooshyar, D Burnside, A Schoenrock, ... Gene 639, 128-136, 2018 | 13 | 2018 |
| The sensitivity of the yeast, Saccharomyces cerevisiae, to acetic acid is influenced by DOM34 and RPL36A B Samanfar, K Shostak, H Moteshareie, M Hajikarimlou, S Shaikho, ... PeerJ 5, e4037, 2017 | 11 | 2017 |
| PIPE4: Fast PPI predictor for comprehensive inter-and cross-species interactomes K Dick, B Samanfar, B Barnes, ER Cober, B Mimee, SJ Molnar, KK Biggar, ... Scientific reports 10 (1), 1-15, 2020 | 8 | 2020 |
| Heavy metal sensitivities of gene deletion strains for ITT1 and RPS1A connect their activities to the expression of URE2, a key gene involved in metal … H Moteshareie, M Hajikarimlou, A Mulet Indrayanti, D Burnside, ... Plos one 13 (9), e0198704, 2018 | 6 | 2018 |
| Elevated levels of ribosomal proteins eL36 and eL42 control expression of Hsp90 in rhabdomyosarcoma S Shaikho, CC Dobson, T Naing, B Samanfar, H Moteshareie, ... Translation 4 (2), e1244395, 2016 | 4 | 2016 |
| Identifying new variation at the J locus, previously identified as e6, in long juvenile ‘Paranagoiana’soybean N Nissan, ER Cober, M Sadowski, M Charette, A Golshani, B Samanfar Theoretical and Applied Genetics 134 (4), 1007-1014, 2021 | 3 | 2021 |
| In silico engineering of synthetic binding proteins from random amino acid sequences D Burnside, A Schoenrock, H Moteshareie, M Hooshyar, P Basra, ... Iscience 11, 375-387, 2019 | 3 | 2019 |
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