Martin Scharm
Martin Scharm
Head of IT @ Dept. of Systems Biology and Bioinformatics
binfalse.de üzerinde doğrulanmış e-posta adresine sahip - Ana Sayfa
Başlık
Alıntı yapanlar
Alıntı yapanlar
Yıl
COMBINE archive and OMEX format: one file to share all information to reproduce a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
BMC bioinformatics 15 (1), 1-9, 2014
932014
Toward community standards and software for whole-cell modeling
D Waltemath, JR Karr, FT Bergmann, V Chelliah, M Hucka, M Krantz, ...
IEEE Transactions on Biomedical Engineering 63 (10), 2007-2014, 2016
482016
The cardiac electrophysiology web lab
J Cooper, M Scharm, GR Mirams
Biophysical journal 110 (2), 292-300, 2016
472016
SBML Level 3: an extensible format for the exchange and reuse of biological models
SM Keating, D Waltemath, M König, F Zhang, A Dräger, C Chaouiya, ...
Molecular systems biology 16 (8), e9110, 2020
342020
Harmonizing semantic annotations for computational models in biology
ML Neal, M König, D Nickerson, G Mısırlı, R Kalbasi, A Dräger, K Atalag, ...
Briefings in bioinformatics 20 (2), 540-550, 2019
322019
Improving the reuse of computational models through version control
D Waltemath, R Henkel, R Hälke, M Scharm, O Wolkenhauer
Bioinformatics 29 (6), 742-748, 2013
322013
An algorithm to detect and communicate the differences in computational models describing biological systems
M Scharm, O Wolkenhauer, D Waltemath
Bioinformatics 32 (4), 563-570, 2016
222016
The CombineArchiveWeb application–A web based tool to handle files associated with modelling results
M Scharm, F Wendland, M Peters, M Wolfien, T Theile, D Waltemath
PeerJ PrePrints, 2014
132014
SED-ML web tools: generate, modify and export standard-compliant simulation studies
FT Bergmann, D Nickerson, D Waltemath, M Scharm
Bioinformatics 33 (8), 1253-1254, 2017
112017
COMODI: an ontology to characterise differences in versions of computational models in biology
M Scharm, D Waltemath, P Mendes, O Wolkenhauer
Journal of biomedical semantics 7 (1), 1-8, 2016
102016
A fully featured COMBINE archive of a simulation study on syncytial mitotic cycles in Drosophila embryos
M Scharm, D Waltemath
F1000Research 5, 2016
82016
Extracting reproducible simulation studies from model repositories using the CombineArchive Toolkit
M Scharm, D Waltemath
Datenbanksysteme für Business, Technologie und Web (BTW 2015)-Workshopband, 2015
72015
The CombineArchive Toolkit-facilitating the transfer of research results
M Scharm, F Wendland, M Peters, M Wolfien, T Theile, D Waltemath
PeerJ PrePrints 2, e514v1, 2014
42014
Improving Reproducibility and Reuse of Modelling Results in the Life Sciences
M Scharm
Universität, 2018
32018
Data management in computational systems biology: exploring standards, tools, databases, and packaging best practices
NJ Stanford, M Scharm, PD Dobson, M Golebiewski, M Hucka, ...
Yeast Systems Biology, 285-314, 2019
22019
Exploring the Metabolic Heterogeneity of Cancers: A Benchmark Study of Context-Specific Models
M Jalili, M Scharm, O Wolkenhauer, M Damaghi, A Salehzadeh-Yazdi
Journal of Personalized Medicine 11 (6), 496, 2021
12021
GEMtractor: extracting views into genome-scale metabolic models
M Scharm, O Wolkenhauer, M Jalili, A Salehzadeh-Yazdi
Bioinformatics 36 (10), 3281-3282, 2020
12020
Evolution of computational models in BioModels Database and the Physiome Model Repository
M Scharm, T Gebhardt, V Touré, A Bagnacani, A Salehzadeh-Yazdi, ...
BMC systems biology 12 (1), 1-10, 2018
12018
Computational Tool
J Cooper, M Scharm, GR Mirams
Biophysical Journal 110, 292-300, 2016
12016
One file to share them all: using the COMBINE archive and the OMEX format to share all information about a modeling project
FT Bergmann, R Adams, S Moodie, J Cooper, M Glont, M Golebiewski, ...
arXiv preprint arXiv:1407.4992, 2014
12014
Sistem, işlemi şu anda gerçekleştiremiyor. Daha sonra yeniden deneyin.
Makaleler 1–20