David La
David La
Verified email at uw.edu
Cited by
Cited by
Fast protein tertiary structure retrieval based on global surface shape similarity
L Sael, B Li, D La, Y Fang, K Ramani, R Rustamov, D Kihara
Proteins: Structure, Function, and Bioinformatics 72 (4), 1259-1273, 2008
Characterization of local geometry of protein surfaces with the visibility criterion
B Li, S Turuvekere, M Agrawal, D La, K Ramani, D Kihara
Proteins: Structure, Function, and Bioinformatics 71 (2), 670-683, 2008
Rapid comparison of properties on protein surface
L Sael, D La, B Li, R Rustamov, D Kihara
Proteins: Structure, function, and bioinformatics 73 (1), 1-10, 2008
Predicting protein functional sites with phylogenetic motifs
D La, B Sutch, DR Livesay
Proteins: Structure, Function, and Bioinformatics 58 (2), 309-320, 2005
3D-SURFER: software for high-throughput protein surface comparison and analysis
D La, J Esquivel-Rodríguez, V Venkatraman, B Li, L Sael, S Ueng, ...
Bioinformatics 25 (21), 2843-2844, 2009
Predicting permanent and transient protein–protein interfaces
D La, M Kong, W Hoffman, YI Choi, D Kihara
Proteins: Structure, Function, and Bioinformatics 81 (5), 805-818, 2013
The evolutionary origins and catalytic importance of conserved electrostatic networks within TIM‐barrel proteins
DR Livesay, D La
Protein science 14 (5), 1158-1170, 2005
N-Terminal Gly 224–Gly 411 domain in Listeria adhesion protein interacts with host receptor Hsp60
B Jagadeesan, AEF Littlejohn, MAR Amalaradjou, AK Singh, KK Mishra, ...
PloS one 6 (6), e20694, 2011
Predicting functional sites with an automated algorithm suitable for heterogeneous datasets
D La, DR Livesay
BMC bioinformatics 6 (1), 1-12, 2005
Using motif-based methods in multiple genome analyses: a case study comparing orthologous mesophilic and thermophilic proteins
D La, M Silver, RC Edgar, DR Livesay
Biochemistry 42 (30), 8988-8998, 2003
MINER: software for phylogenetic motif identification
D La, DR Livesay
Nucleic acids research 33 (suppl_2), W267-W270, 2005
A novel method for protein–protein interaction site prediction using phylogenetic substitution models
D La, D Kihara
Proteins: Structure, Function, and Bioinformatics 80 (1), 126-141, 2012
Improved phylogenetic motif detection using parsimony
U Roshan, DR Livesay, D La
Fifth IEEE Symposium on Bioinformatics and Bioengineering (BIBE'05), 19-26, 2005
Predicting protein functional sites with phylogenetic motifs: past, present and beyond
DR Livesay, DB Kc, D La
Protein Function Prediction for Omics Era, 93-105, 2011
Computational models of mutations for predicting and classifying protein-protein interaction sites
D La
Discovering Protein-Protein Interaction Sites from Sequence and Structure
D La, D Kihara
Biological Data Mining in Protein Interaction Networks, 64-79, 2009
Robust Large-scale Protein Functional Site Prediction with Phylogenetic Motifs
D La
California State Polytechnic University, Pomona, 2005
Phylogentic motifs: A novel approach to protein functional site prediction
D La, DR Livesay
PROTEIN SCIENCE 13, 70-70, 2004
PFP: Sequence-based annotation of sequences and local sequence motifs with contextual GO term association
T Hawkins, S Luban, D La, D Kihara
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