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Shashidhar Ravishankar
Shashidhar Ravishankar
Staff Scientist, Warren Lab, Fred Hutchinson Cancer Research Center
Verified email at fredhutch.org
Title
Cited by
Cited by
Year
Next-generation sequencing and bioinformatics protocol for malaria drug resistance marker surveillance
E Talundzic, S Ravishankar, J Kelley, D Patel, M Plucinski, S Schmedes, ...
Antimicrobial Agents and Chemotherapy 62 (4), 10.1128/aac. 02474-17, 2018
652018
TLR-exosomes exhibit distinct kinetics and effector function
S Srinivasan, M Su, S Ravishankar, J Moore, PS Head, JB Dixon, ...
Scientific Reports 7 (1), 41623, 2017
302017
Mapping-free variant calling using haplotype reconstruction from k-mer frequencies
PA Audano, S Ravishankar, FO Vannberg
Bioinformatics 34 (10), 1659-1665, 2018
252018
First Full Draft Genome Sequence of Plasmodium brasilianum
E Talundzic, S Ravishankar, V Nayak, DS Patel, C Olsen, M Sheth, ...
Genome Announcements 5 (6), 10.1128/genomea. 01566-16, 2017
172017
Evolution and Genetic Diversity of the k13 Gene Associated with Artemisinin Delayed Parasite Clearance in Plasmodium falciparum
MA Pacheco, ER Kadakia, Z Chaudhary, DJ Perkins, J Kelley, ...
Antimicrobial Agents and Chemotherapy 63 (8), 10.1128/aac. 02550-18, 2019
162019
RNA helicase, DDX3X, is actively recruited to sites of DNA damage in live cells
MJ Cargill, A Morales, S Ravishankar, EH Warren
DNA repair 103, 103137, 2021
132021
Targeted deep amplicon sequencing of antimalarial resistance markers in Plasmodium falciparum isolates from Cameroon
M L’Episcopia, J Kelley, BGD Dongho, D Patel, S Schmedes, ...
International Journal of Infectious Diseases 107, 234-241, 2021
122021
Xomannotate: analysis of heterogeneous and complex exome-a step towards translational medicine
AK Talukder, S Ravishankar, K Sasmal, S Gandham, J Prabhukumar, ...
PLoS One 10 (4), e0123569, 2015
82015
The first complete genome of the simian malaria parasite Plasmodium brasilianum
M Bajic, S Ravishankar, M Sheth, LA Rowe, MA Pacheco, DS Patel, ...
Scientific Reports 12 (1), 19802, 2022
62022
Serial analysis of the T-cell receptor β-chain repertoire in people living with HIV reveals incomplete recovery after long-term antiretroviral therapy
AMH Towlerton, S Ravishankar, DG Coffey, CE Puronen, EH Warren
Frontiers in Immunology 13, 879190, 2022
42022
Class II HLA-DRB4 is a predictive biomarker for survival following immunotherapy in metastatic non-small cell lung cancer
CY Jiang, L Zhao, MD Green, S Ravishankar, AMH Towlerton, AJ Scott, ...
Scientific Reports 14 (1), 345, 2024
2024
The signature of a T-cell response to KSHV persists across space and time in individuals with epidemic and endemic KS from Uganda
S Ravishankar, AMH Towlerton, P Mooka, J Kafeero, DG Coffey, ...
bioRxiv, 2024.02. 06.579223, 2024
2024
Role of HLA-DRB4 as a biomarker for endocrine toxicity and survival outcomes after immunotherapy in metastatic non-small cell lung cancer.
C Jiang, S Ravishankar, L Zhao, M Green, A Towlerton, A Scott, ...
Journal of Clinical Oncology 41 (16_suppl), e21005-e21005, 2023
2023
Genetic epidemiology algorithms for tracking drug resistance variants and genomic clustering of plasmodium species
S Ravishankar
Georgia Institute of Technology, 2019
2019
Next-generation Sequence-analysis Toolkit (NeST): A standardized bioinformatics framework for analyzing Single Nucleotide Polymorphisms in next-generation sequencing data
S Ravishankar, SE Schmedes, DS Patel, M Plucinski, V Udhayakumar, ...
bioRxiv, 323535, 2018
2018
TARGETED DEEP AMPLICON SEQUENCING ANALYSIS OF KELCH 13 AND CYTOCHROME B GENES IN PLASMODIUM FALCIPARUM ISOLATES FROM …
M L'Episcopia, M Menegon, C Severini, A Nurahmed, A Talha, B Nour, ...
AMERICAN JOURNAL OF TROPICAL MEDICINE AND HYGIENE 99 (4), 534-534, 2018
2018
First full draft genome sequence of Plasmodium brasilianum. Genome Announc 5: e01566-16
E Talundzic, S Ravishankar, V Nayak, DS Patel, C Olsen, M Sheth, ...
2017
Mapping-free variant calling using haplotype reconstruction from k-mer frequencies Supplementary material
P Audano, S Ravishankar, F Vannberg
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